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  5. MA_81219g0030

MA_81219g0030


Description : DExH-box ATP-dependent RNA helicase DExH12 OS=Arabidopsis thaliana (sp|q9syp1|dexhc_arath : 1053.0)


Gene families : OG0000989 (Archaeplastida) Phylogenetic Tree(s): OG0000989_tree ,
OG_05_0001451 (LandPlants) Phylogenetic Tree(s): OG_05_0001451_tree ,
OG_06_0001729 (SeedPlants) Phylogenetic Tree(s): OG_06_0001729_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_81219g0030
Cluster HCCA: Cluster_393

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00114710 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.spliceosome... 0.08 Archaeplastida
AMTR_s00077p00041680 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH12... 0.04 Archaeplastida
AMTR_s00110p00146400 evm_27.TU.AmTr_v1... DExH-box ATP-dependent RNA helicase DExH14... 0.06 Archaeplastida
AT1G20960 emb1507 U5 small nuclear ribonucleoprotein helicase, putative 0.02 Archaeplastida
AT5G61140 No alias U5 small nuclear ribonucleoprotein helicase 0.07 Archaeplastida
Cpa|evm.model.tig00000865.27 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.06 Archaeplastida
Cpa|evm.model.tig00000865.28 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.06 Archaeplastida
Cre17.g744147 No alias RNA processing.RNA splicing.spliceosome... 0.03 Archaeplastida
GSVIVT01007875001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.17 Archaeplastida
GSVIVT01010769001 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.12 Archaeplastida
Gb_18049 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 Archaeplastida
Gb_27895 No alias RNA helicase (Brr2) 0.06 Archaeplastida
LOC_Os02g01740.1 No alias RNA helicase (Brr2) 0.09 Archaeplastida
LOC_Os03g11470.1 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 Archaeplastida
MA_10434882g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.06 Archaeplastida
MA_81219g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_930633g0010 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.1 Archaeplastida
Mp1g06890.1 No alias RNA helicase (Brr2) 0.12 Archaeplastida
Mp7g00250.1 No alias RNA helicase (Brr2) 0.03 Archaeplastida
Pp3c1_35880V3.1 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.07 Archaeplastida
Pp3c2_9850V3.1 No alias U5 small nuclear ribonucleoprotein helicase 0.05 Archaeplastida
Smo144158 No alias RNA processing.RNA splicing.spliceosome... 0.04 Archaeplastida
Smo178863 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.04 Archaeplastida
Smo410613 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 Archaeplastida
Solyc06g069480.3.1 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 Archaeplastida
Solyc06g082100.4.1 No alias RNA helicase (Brr2) 0.08 Archaeplastida
Zm00001e035676_P001 No alias RNA helicase (Brr2) 0.04 Archaeplastida
Zm00001e038727_P001 No alias DExH-box ATP-dependent RNA helicase DExH14... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004179 Sec63-dom 6 42
IPR004179 Sec63-dom 411 728
No external refs found!