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  5. AT5G64320

AT5G64320


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G64320
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00015p00258950 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.05 Archaeplastida
AMTR_s00024p00204830 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g39710... 0.02 Archaeplastida
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.06 Archaeplastida
AMTR_s00066p00107660 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00111p00140430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g01400,... 0.08 Archaeplastida
AMTR_s00135p00057260 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g18475... 0.02 Archaeplastida
AMTR_s00221p00020810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.04 Archaeplastida
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.13 Archaeplastida
GSVIVT01002056001 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.03 Archaeplastida
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.05 Archaeplastida
GSVIVT01024665001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
GSVIVT01031218001 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.03 Archaeplastida
Gb_00757 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 Archaeplastida
Gb_05553 No alias group-II intron mitochondrial splicing factor (MISF74) 0.04 Archaeplastida
Gb_06545 No alias Pentatricopeptide repeat-containing protein At2g06000... 0.07 Archaeplastida
Gb_06893 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_07822 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.09 Archaeplastida
Gb_14900 No alias Pentatricopeptide repeat-containing protein At4g20090... 0.04 Archaeplastida
Gb_21920 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.05 Archaeplastida
Gb_23263 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.08 Archaeplastida
Gb_35219 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.04 Archaeplastida
Gb_37573 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.07 Archaeplastida
LOC_Os01g57630.2 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.03 Archaeplastida
LOC_Os01g63400.1 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.02 Archaeplastida
LOC_Os02g26890.1 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.04 Archaeplastida
LOC_Os05g04160.1 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.07 Archaeplastida
LOC_Os05g11700.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os08g39050.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.12 Archaeplastida
MA_10316984g0010 No alias group-II intron mitochondrial splicing factor (MISF74) 0.05 Archaeplastida
MA_10431376g0010 No alias Pentatricopeptide repeat-containing protein At4g20090... 0.03 Archaeplastida
MA_128052g0010 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 Archaeplastida
MA_137206g0010 No alias PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.04 Archaeplastida
MA_17644g0010 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.03 Archaeplastida
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.07 Archaeplastida
MA_57592g0010 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 Archaeplastida
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.06 Archaeplastida
MA_742945g0010 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.05 Archaeplastida
MA_80720g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Smo74408 No alias Pentatricopeptide repeat-containing protein At1g12775,... 0.03 Archaeplastida
Smo78295 No alias No description available 0.03 Archaeplastida
Solyc02g077650.2.1 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.08 Archaeplastida
Solyc09g061760.1.1 No alias Pentatricopeptide repeat-containing protein At2g17525,... 0.07 Archaeplastida
Solyc11g068470.3.1 No alias group-II intron mitochondrial splicing factor (MISF74) 0.04 Archaeplastida
Solyc11g073230.1.1 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.03 Archaeplastida
Solyc12g014330.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Solyc12g035170.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e003447_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e011589_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.04 Archaeplastida
Zm00001e030818_P001 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.07 Archaeplastida
Zm00001e034625_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Neighborhood
BP GO:0000959 mitochondrial RNA metabolic process IEP Neighborhood
CC GO:0005635 nuclear envelope IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0008285 negative regulation of cell proliferation IEP Neighborhood
BP GO:0009410 response to xenobiotic stimulus IEP Neighborhood
BP GO:0010015 root morphogenesis IEP Neighborhood
BP GO:0010101 post-embryonic root morphogenesis IEP Neighborhood
BP GO:0010102 lateral root morphogenesis IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010332 response to gamma radiation IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0032204 regulation of telomere maintenance IEP Neighborhood
BP GO:0043247 telomere maintenance in response to DNA damage IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0048766 root hair initiation IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
BP GO:0080156 mitochondrial mRNA modification IEP Neighborhood
BP GO:0090697 post-embryonic plant organ morphogenesis IEP Neighborhood
BP GO:1900864 mitochondrial RNA modification IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 218 248
IPR002885 Pentatricopeptide_repeat 250 299
IPR002885 Pentatricopeptide_repeat 667 713
IPR002885 Pentatricopeptide_repeat 528 576
IPR002885 Pentatricopeptide_repeat 457 505
IPR002885 Pentatricopeptide_repeat 597 646
IPR002885 Pentatricopeptide_repeat 387 436
IPR002885 Pentatricopeptide_repeat 350 380
IPR002885 Pentatricopeptide_repeat 316 345
No external refs found!