Description : CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana (sp|q8l7c2|cfm2_arath : 193.0)
Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0015078 (LandPlants) Phylogenetic Tree(s): OG_05_0015078_tree ,
OG_06_0019048 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: MA_8161870g0010 | |
Cluster | HCCA: Cluster_35 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00002p00265220 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.02 | Archaeplastida | |
AMTR_s00045p00114550 | evm_27.TU.AmTr_v1... | RNA processing.organelle machineries.RNA... | 0.05 | Archaeplastida | |
AMTR_s00079p00107040 | evm_27.TU.AmTr_v1... | CRM-domain containing factor CFM3,... | 0.03 | Archaeplastida | |
AT3G01370 | ATCFM2, CFM2 | CRM family member 2 | 0.03 | Archaeplastida | |
AT3G18390 | EMB1865 | CRS1 / YhbY (CRM) domain-containing protein | 0.02 | Archaeplastida | |
AT3G23070 | ATCFM3A, CFM3A | CRM family member 3A | 0.06 | Archaeplastida | |
AT4G29750 | No alias | CRS1 / YhbY (CRM) domain-containing protein | 0.03 | Archaeplastida | |
AT5G16180 | ATCRS1, CRS1 | ortholog of maize chloroplast splicing factor CRS1 | 0.02 | Archaeplastida | |
GSVIVT01015193001 | No alias | RNA processing.organelle machineries.RNA... | 0.05 | Archaeplastida | |
GSVIVT01018109001 | No alias | RNA processing.organelle machineries.RNA... | 0.05 | Archaeplastida | |
GSVIVT01032542001 | No alias | RNA processing.organelle machineries.RNA... | 0.04 | Archaeplastida | |
LOC_Os05g47850.1 | No alias | CRM-domain containing factor CFM3,... | 0.03 | Archaeplastida | |
LOC_Os09g19850.1 | No alias | CRM-domain containing factor CFM3,... | 0.03 | Archaeplastida | |
Pp3c12_15870V3.1 | No alias | CRM family member 2 | 0.03 | Archaeplastida | |
Pp3c13_17270V3.1 | No alias | CRM family member 2 | 0.04 | Archaeplastida | |
Solyc02g086200.3.1 | No alias | no hits & (original description: none) | 0.05 | Archaeplastida | |
Solyc03g119450.3.1 | No alias | CRM-domain containing factor CFM3,... | 0.02 | Archaeplastida | |
Solyc07g039500.4.1 | No alias | CRM-domain containing factor CFM3,... | 0.05 | Archaeplastida | |
Solyc09g083350.3.1 | No alias | CFM3-type plastidial RNA splicing factor | 0.03 | Archaeplastida | |
Zm00001e011272_P001 | No alias | CFM3-type plastidial RNA splicing factor | 0.07 | Archaeplastida | |
Zm00001e033939_P001 | No alias | CRM-domain containing factor CFM3,... | 0.04 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
MF | GO:0005525 | GTP binding | IEP | Neighborhood |
MF | GO:0016874 | ligase activity | IEP | Neighborhood |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001890 | RNA-binding_CRM | 160 | 227 |
No external refs found! |