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Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 531.0)
Gene families : OG0008686 (Archaeplastida) Phylogenetic Tree(s): OG0008686_tree ,
OG_05_0093988 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0075006 (SeedPlants) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: MA_820066g0010 | |
| Cluster | HCCA: Cluster_454 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Gb_11039 | No alias | RNA editing factor (CRR21) | 0.04 | Archaeplastida | |
| Gb_16072 | No alias | RNA editing factor (OTP82) | 0.11 | Archaeplastida | |
| Gb_21016 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.08 | Archaeplastida | |
| Gb_25868 | No alias | Pentatricopeptide repeat-containing protein At2g13600... | 0.03 | Archaeplastida | |
| Gb_27291 | No alias | Pentatricopeptide repeat-containing protein At2g22070... | 0.07 | Archaeplastida | |
| Gb_35467 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.04 | Archaeplastida | |
| Gb_38897 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.05 | Archaeplastida | |
| MA_130999g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.07 | Archaeplastida | |
| Smo125582 | No alias | Pentatricopeptide repeat-containing protein At1g50270... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0008270 | zinc ion binding | IEP | Neighborhood |
| BP | GO:0009116 | nucleoside metabolic process | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043169 | cation binding | IEP | Neighborhood |
| MF | GO:0046872 | metal ion binding | IEP | Neighborhood |
| MF | GO:0046914 | transition metal ion binding | IEP | Neighborhood |
| BP | GO:1901657 | glycosyl compound metabolic process | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 696 | 719 |
| IPR002885 | Pentatricopeptide_repeat | 595 | 620 |
| IPR002885 | Pentatricopeptide_repeat | 95 | 122 |
| IPR002885 | Pentatricopeptide_repeat | 255 | 302 |
| IPR002885 | Pentatricopeptide_repeat | 388 | 429 |
| IPR002885 | Pentatricopeptide_repeat | 621 | 667 |
| IPR002885 | Pentatricopeptide_repeat | 123 | 170 |
| IPR002885 | Pentatricopeptide_repeat | 520 | 567 |
| IPR002885 | Pentatricopeptide_repeat | 220 | 251 |
| IPR002885 | Pentatricopeptide_repeat | 355 | 385 |
| IPR002885 | Pentatricopeptide_repeat | 486 | 517 |
| No external refs found! |