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  5. MA_82569g0020

MA_82569g0020


Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic OS=Arabidopsis thaliana (sp|q3e6q1|ppr32_arath : 422.0)


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_82569g0020
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00122p00115170 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AT1G15510 VAC1, ECB2, ATECB2 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G29230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
GSVIVT01011455001 No alias Pentatricopeptide repeat-containing protein At2g20540... 0.01 Archaeplastida
Solyc02g088470.1.1 No alias Pentatricopeptide repeat-containing protein At3g29230... 0.03 Archaeplastida
Solyc03g111210.4.1 No alias RNA editing factor (OTP80) 0.04 Archaeplastida
Solyc03g119950.1.1 No alias RNA editing factor (ECB2/VAC1) 0.03 Archaeplastida
Solyc05g013200.1.1 No alias RNA editing factor (OTP85) 0.02 Archaeplastida
Solyc06g009500.1.1 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
Solyc07g062820.1.1 No alias RNA editing factor (SEL1/PDM1) 0.05 Archaeplastida
Solyc09g082450.1.1 No alias RNA editing factor (YS1) 0.03 Archaeplastida
Solyc12g006575.1.1 No alias RNA editing factor (OTP82) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 94 142
IPR002885 Pentatricopeptide_repeat 296 344
IPR002885 Pentatricopeptide_repeat 195 242
IPR002885 Pentatricopeptide_repeat 397 445
IPR002885 Pentatricopeptide_repeat 2 26
No external refs found!