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  5. MA_84527g0010

MA_84527g0010


Description : component MED13 of kinase module of MEDIATOR transcription co-activator complex


Gene families : OG0005370 (Archaeplastida) Phylogenetic Tree(s): OG0005370_tree ,
OG_05_0006036 (LandPlants) Phylogenetic Tree(s): OG_05_0006036_tree ,
OG_06_0007595 (SeedPlants) Phylogenetic Tree(s): OG_06_0007595_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_84527g0010
Cluster HCCA: Cluster_380

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00198p00028070 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.07 Archaeplastida
AT1G55325 GCT RNA polymerase II transcription mediators 0.19 Archaeplastida
GSVIVT01025465001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.11 Archaeplastida
Gb_30550 No alias component MED13 of kinase module of MEDIATOR... 0.13 Archaeplastida
LOC_Os05g37500.1 No alias component MED13 of kinase module of MEDIATOR... 0.08 Archaeplastida
MA_10433289g0010 No alias No annotation 0.07 Archaeplastida
Mp1g01940.1 No alias component MED13 of kinase module of MEDIATOR... 0.1 Archaeplastida
Pp3c11_22280V3.1 No alias RNA polymerase II transcription mediators 0.02 Archaeplastida
Pp3c7_4610V3.1 No alias RNA polymerase II transcription mediators 0.02 Archaeplastida
Smo447924 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.07 Archaeplastida
Solyc04g039950.4.1 No alias component MED13 of kinase module of MEDIATOR... 0.1 Archaeplastida
Zm00001e036721_P002 No alias component MED13 of kinase module of MEDIATOR... 0.1 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!