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  5. MA_858608g0010

MA_858608g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 593.0)


Gene families : OG0002360 (Archaeplastida) Phylogenetic Tree(s): OG0002360_tree ,
OG_05_0000472 (LandPlants) Phylogenetic Tree(s): OG_05_0000472_tree ,
OG_06_0000277 (SeedPlants) Phylogenetic Tree(s): OG_06_0000277_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_858608g0010
Cluster HCCA: Cluster_372

Target Alias Description ECC score Gene Family Method Actions
AT2G15690 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G16835 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Archaeplastida
Gb_02613 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.14 Archaeplastida
Gb_05982 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
Gb_07106 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_10270 No alias RNA editing factor (MEF8). RNA editing factor (BLX) 0.07 Archaeplastida
Gb_13717 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_14391 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
Gb_15797 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_18978 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
Gb_28765 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_31111 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.08 Archaeplastida
Gb_31794 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.05 Archaeplastida
Gb_33367 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_35793 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.12 Archaeplastida
Gb_38824 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
LOC_Os08g05750.1 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.03 Archaeplastida
MA_10431508g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_12023g0010 No alias RNA editing factor (MEF9) 0.09 Archaeplastida
MA_121102g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_136498g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
MA_141118g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_14659g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_189553g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_376862g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
MA_68580g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_71420g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
MA_904305g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Smo107192 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.01 Archaeplastida
Smo92492 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
Solyc07g021620.1.1 No alias RNA editing factor (BLX) 0.02 Archaeplastida
Zm00001e015695_P001 No alias Pentatricopeptide repeat-containing protein At4g16835,... 0.02 Archaeplastida
Zm00001e026664_P002 No alias RNA editing factor (BLX) 0.05 Archaeplastida
Zm00001e032581_P001 No alias RNA editing factor (BLX) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 156 181
IPR002885 Pentatricopeptide_repeat 363 384
IPR002885 Pentatricopeptide_repeat 285 333
IPR002885 Pentatricopeptide_repeat 21 69
IPR002885 Pentatricopeptide_repeat 184 232
IPR002885 Pentatricopeptide_repeat 122 154
IPR032867 DYW_dom 459 583
No external refs found!