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  5. AT5G66500

AT5G66500


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0014034 (LandPlants) Phylogenetic Tree(s): OG_05_0014034_tree ,
OG_06_0013967 (SeedPlants) Phylogenetic Tree(s): OG_06_0013967_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G66500
Cluster HCCA: Cluster_309

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00181560 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
AMTR_s00008p00153950 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00008p00241920 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
AMTR_s00040p00098330 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g46790,... 0.02 Archaeplastida
AMTR_s00051p00085060 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g16610... 0.03 Archaeplastida
AMTR_s00057p00137550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g36980,... 0.04 Archaeplastida
AMTR_s00057p00151990 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
AMTR_s00058p00187000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33760... 0.06 Archaeplastida
AMTR_s00065p00031420 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
AMTR_s00068p00031610 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Gb_00194 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_00201 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_02031 No alias RNA editing factor (MEF19) 0.04 Archaeplastida
Gb_02194 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_03137 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Gb_03473 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.05 Archaeplastida
Gb_03959 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_03997 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_04446 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_04449 No alias RNA editing factor (MEF19) 0.05 Archaeplastida
Gb_04450 No alias OTP70 plastidial RNA splicing factor 0.04 Archaeplastida
Gb_04533 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_04616 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_05127 No alias Pentatricopeptide repeat-containing protein At3g26540... 0.03 Archaeplastida
Gb_05939 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_07635 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_08745 No alias RNA editing factor (OTP82) 0.04 Archaeplastida
Gb_09409 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.05 Archaeplastida
Gb_09410 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_10133 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_12585 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_14459 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_15588 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
Gb_16032 No alias Pentatricopeptide repeat-containing protein At3g49170,... 0.04 Archaeplastida
Gb_16101 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
Gb_16328 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_16366 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Gb_16848 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_17094 No alias RNA editing factor (MEF19) 0.03 Archaeplastida
Gb_18436 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida
Gb_20266 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_20488 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.06 Archaeplastida
Gb_20749 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_21055 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_21056 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_21351 No alias RNA editing factor (CRR21) 0.04 Archaeplastida
Gb_21435 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.04 Archaeplastida
Gb_21555 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
Gb_22805 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_23083 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_23605 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Gb_25271 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_26311 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_26695 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.04 Archaeplastida
Gb_26696 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_27460 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Gb_29873 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_29879 No alias RNA editing factor (MEF19). RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_30661 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_32051 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_32455 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.05 Archaeplastida
Gb_32528 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.07 Archaeplastida
Gb_32983 No alias Pentatricopeptide repeat-containing protein At3g49710... 0.04 Archaeplastida
Gb_33294 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_33374 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.03 Archaeplastida
Gb_33575 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Gb_33719 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_34248 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
Gb_35395 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_35645 No alias Pentatricopeptide repeat-containing protein At3g46790,... 0.03 Archaeplastida
Gb_36172 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.04 Archaeplastida
Gb_36260 No alias Pentatricopeptide repeat-containing protein At1g09410,... 0.04 Archaeplastida
Gb_37102 No alias RNA editing factor (MEF19) 0.05 Archaeplastida
Gb_39558 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_40388 No alias RNA editing factor (MEF11) 0.08 Archaeplastida
Gb_40434 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_40436 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Gb_40680 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.09 Archaeplastida
Gb_41234 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
Gb_41317 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.04 Archaeplastida
Gb_41648 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.07 Archaeplastida
Gb_41753 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_10214098g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_10257685g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_10277392g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
MA_10429837g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_107356g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_112849g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
MA_114722g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_116442g0010 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.05 Archaeplastida
MA_11765g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_119635g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_121267g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_124868g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.05 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_131437g0010 No alias RNA editing factor (MEF3) 0.04 Archaeplastida
MA_138190g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_14938g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_16226g0010 No alias Pentatricopeptide repeat-containing protein At3g63370,... 0.02 Archaeplastida
MA_19816g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_20899g0020 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_25584g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_30632g0020 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_3317g0020 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_33533g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida
MA_3449g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
MA_36643g0010 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.03 Archaeplastida
MA_39263g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_445076g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
MA_483636g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_50789g0010 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
MA_52613g0020 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.1 Archaeplastida
MA_55967g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_56322g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
MA_57048g0010 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
MA_59148g0010 No alias RNA editing factor (MEF11) 0.02 Archaeplastida
MA_656915g0010 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.02 Archaeplastida
MA_683665g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_68933g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
MA_75255g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_805687g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Archaeplastida
MA_8607116g0010 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.02 Archaeplastida
MA_86739g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_8868720g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0003002 regionalization IEP Neighborhood
BP GO:0009888 tissue development IEP Neighborhood
BP GO:0010051 xylem and phloem pattern formation IEP Neighborhood
BP GO:0010087 phloem or xylem histogenesis IEP Neighborhood
BP GO:0010305 leaf vascular tissue pattern formation IEP Neighborhood
BP GO:0010588 cotyledon vascular tissue pattern formation IEP Neighborhood
BP GO:0048366 leaf development IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 148 196
IPR002885 Pentatricopeptide_repeat 345 395
IPR002885 Pentatricopeptide_repeat 423 449
IPR002885 Pentatricopeptide_repeat 319 344
IPR002885 Pentatricopeptide_repeat 223 244
IPR002885 Pentatricopeptide_repeat 252 274
No external refs found!