AT5G67120

Description : RING/U-box superfamily protein

Gene families : OG0000125 (Archaeplastida) Phylogenetic Tree(s): OG0000125_tree ,
OG_05_0000151 (LandPlants) Phylogenetic Tree(s): OG_05_0000151_tree ,
OG_06_0041204 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G67120
Cluster	HCCA: Cluster_181

Target	Alias	Description	ECC score	Gene Family Method
AT5G52140	No alias	RING/U-box superfamily protein	0.05	Archaeplastida
GSVIVT01022107001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01022110001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
LOC_Os04g51400.2	No alias	E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
MF	GO:0008270	zinc ion binding	ISS	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	Neighborhood
MF	GO:0005402	carbohydrate:cation symporter activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0006869	lipid transport	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
BP	GO:0009299	mRNA transcription	IEP	Neighborhood
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015293	symporter activity	IEP	Neighborhood
MF	GO:0015294	solute:cation symporter activity	IEP	Neighborhood
MF	GO:0015295	solute:proton symporter activity	IEP	Neighborhood
CC	GO:0031350	intrinsic component of plastid membrane	IEP	Neighborhood
CC	GO:0031351	integral component of plastid membrane	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	226	268

External Links

No external refs found!