AT1G27630 (CYCT1;3)

Aliases : CYCT1;3

Description : cyclin T 1;3

Gene families : OG0000352 (Archaeplastida) Phylogenetic Tree(s): OG0000352_tree ,
OG_05_0001681 (LandPlants) Phylogenetic Tree(s): OG_05_0001681_tree ,
OG_06_0001929 (SeedPlants) Phylogenetic Tree(s): OG_06_0001929_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G27630
Cluster	HCCA: Cluster_219

Target	Alias	Description	ECC score	Gene Family Method	Actions
MA_10429315g0010	No alias	cyclin (CYCL)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004674	protein serine/threonine kinase activity	None	Extended
MF	GO:0004693	cyclin-dependent protein serine/threonine kinase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	None	Extended
BP	GO:0006366	transcription by RNA polymerase II	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051726	regulation of cell cycle	ISS	Interproscan
MF	GO:0060089	molecular transducer activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097472	cyclin-dependent protein kinase activity	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	Neighborhood
MF	GO:0000309	nicotinamide-nucleotide adenylyltransferase activity	IEP	Neighborhood
MF	GO:0004515	nicotinate-nucleotide adenylyltransferase activity	IEP	Neighborhood
MF	GO:0004605	phosphatidate cytidylyltransferase activity	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
CC	GO:0005759	mitochondrial matrix	IEP	Neighborhood
BP	GO:0006333	chromatin assembly or disassembly	IEP	Neighborhood
BP	GO:0006730	one-carbon metabolic process	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006863	purine nucleobase transport	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
BP	GO:0007623	circadian rhythm	IEP	Neighborhood
MF	GO:0008841	dihydrofolate synthase activity	IEP	Neighborhood
BP	GO:0009435	NAD biosynthetic process	IEP	Neighborhood
BP	GO:0015851	nucleobase transport	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016874	ligase activity	IEP	Neighborhood
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Neighborhood
MF	GO:0016881	acid-amino acid ligase activity	IEP	Neighborhood
BP	GO:0019637	organophosphate metabolic process	IEP	Neighborhood
BP	GO:0019674	NAD metabolic process	IEP	Neighborhood
CC	GO:0031974	membrane-enclosed lumen	IEP	Neighborhood
BP	GO:0032091	negative regulation of protein binding	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
BP	GO:0042752	regulation of circadian rhythm	IEP	Neighborhood
CC	GO:0043233	organelle lumen	IEP	Neighborhood
BP	GO:0043393	regulation of protein binding	IEP	Neighborhood
BP	GO:0044092	negative regulation of molecular function	IEP	Neighborhood
BP	GO:0048511	rhythmic process	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0051098	regulation of binding	IEP	Neighborhood
BP	GO:0051100	negative regulation of binding	IEP	Neighborhood
CC	GO:0070013	intracellular organelle lumen	IEP	Neighborhood
MF	GO:0070566	adenylyltransferase activity	IEP	Neighborhood
MF	GO:0070567	cytidylyltransferase activity	IEP	Neighborhood
BP	GO:0080186	developmental vegetative growth	IEP	Neighborhood
BP	GO:0090407	organophosphate biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR006671	Cyclin_N	35	149

External Links

No external refs found!

AT1G27630 (CYCT1;3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation