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  5. MA_9129425g0010

MA_9129425g0010


Description : component RPL40 of LSU proteome component


Gene families : OG0000077 (Archaeplastida) Phylogenetic Tree(s): OG0000077_tree ,
OG_05_0000113 (LandPlants) Phylogenetic Tree(s): OG_05_0000113_tree ,
OG_06_0000087 (SeedPlants) Phylogenetic Tree(s): OG_06_0000087_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_9129425g0010
Cluster HCCA: Cluster_208

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 Archaeplastida
AMTR_s00040p00104050 evm_27.TU.AmTr_v1... Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris 0.02 Archaeplastida
AMTR_s00095p00146440 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
AT1G23410 No alias Ribosomal protein S27a / Ubiquitin family protein 0.05 Archaeplastida
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.05 Archaeplastida
AT2G47110 UBQ6 ubiquitin 6 0.04 Archaeplastida
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.07 Archaeplastida
AT3G62250 UBQ5 ubiquitin 5 0.04 Archaeplastida
Cpa|evm.model.tig00000144.76 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.01 Archaeplastida
Cpa|evm.model.tig00022075.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 Archaeplastida
Cre01.g007051 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.05 Archaeplastida
Cre06.g273600 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 Archaeplastida
GSVIVT01028198001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01033876001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
GSVIVT01038617001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
Gb_01257 No alias component RPL40 of LSU proteome component 0.04 Archaeplastida
Gb_07405 No alias ubiquitin-fold protein (UBQ) 0.03 Archaeplastida
Gb_15027 No alias component RPS27a of SSU proteome 0.06 Archaeplastida
Gb_40288 No alias component RPS27a of SSU proteome 0.06 Archaeplastida
Gb_41257 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
LOC_Os01g22490.1 No alias component RPS27a of SSU proteome 0.05 Archaeplastida
LOC_Os03g13170.1 No alias component RPL40 of LSU proteome component 0.05 Archaeplastida
LOC_Os06g44080.1 No alias ubiquitin-fold protein (RUB) 0.05 Archaeplastida
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.07 Archaeplastida
Pp3c10_25270V3.1 No alias ubiquitin extension protein 1 0.06 Archaeplastida
Pp3c12_5640V3.1 No alias ubiquitin 6 0.04 Archaeplastida
Pp3c12_5760V3.1 No alias ubiquitin 6 0.04 Archaeplastida
Pp3c20_23170V3.1 No alias ubiquitin extension protein 1 0.06 Archaeplastida
Pp3c24_430V3.1 No alias ubiquitin extension protein 1 0.08 Archaeplastida
Pp3c3_25480V3.1 No alias ubiquitin extension protein 1 0.09 Archaeplastida
Pp3c4_11930V3.1 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.05 Archaeplastida
Pp3c4_19000V3.1 No alias ubiquitin 6 0.06 Archaeplastida
Pp3c8_14230V3.1 No alias ubiquitin 6 0.04 Archaeplastida
Smo111605 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.05 Archaeplastida
Solyc01g068045.1.1 No alias component RPS27a of SSU proteome 0.05 Archaeplastida
Solyc01g096290.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc03g082570.4.1 No alias component RPL40 of LSU proteome component 0.07 Archaeplastida
Solyc08g008590.4.1 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
Solyc08g083120.3.1 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
Solyc12g098940.2.1 No alias component RPS27a of SSU proteome 0.04 Archaeplastida
Zm00001e000962_P001 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
Zm00001e000965_P001 No alias component RPL40 of LSU proteome component 0.02 Archaeplastida
Zm00001e009474_P001 No alias component RPL40 of LSU proteome component 0.06 Archaeplastida
Zm00001e026237_P001 No alias component RPS27a of SSU proteome 0.08 Archaeplastida
Zm00001e028916_P001 No alias component RPS27a of SSU proteome 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 78 98
IPR000626 Ubiquitin_dom 3 74
No external refs found!