1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_914400g0010

MA_914400g0010


Description : Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana (sp|q9lvq5|pp432_arath : 435.0)


Gene families : OG0001630 (Archaeplastida) Phylogenetic Tree(s): OG0001630_tree ,
OG_05_0001046 (LandPlants) Phylogenetic Tree(s): OG_05_0001046_tree ,
OG_06_0000527 (SeedPlants) Phylogenetic Tree(s): OG_06_0000527_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_914400g0010
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
MA_10433091g0010 No alias Pentatricopeptide repeat-containing protein At1g62930,... 0.07 Archaeplastida
MA_105495g0010 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.06 Archaeplastida
MA_175359g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
MA_32560g0010 No alias Pentatricopeptide repeat-containing protein At3g22470,... 0.05 Archaeplastida
MA_47344g0010 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.08 Archaeplastida
MA_78481g0010 No alias Pentatricopeptide repeat-containing protein At1g63130,... 0.12 Archaeplastida
MA_9542585g0010 No alias Pentatricopeptide repeat-containing protein At5g55840... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 333 362
IPR002885 Pentatricopeptide_repeat 439 471
IPR002885 Pentatricopeptide_repeat 89 120
IPR002885 Pentatricopeptide_repeat 613 645
IPR002885 Pentatricopeptide_repeat 368 400
IPR002885 Pentatricopeptide_repeat 405 435
IPR002885 Pentatricopeptide_repeat 478 518
IPR002885 Pentatricopeptide_repeat 547 594
IPR002885 Pentatricopeptide_repeat 722 771
IPR002885 Pentatricopeptide_repeat 267 316
IPR002885 Pentatricopeptide_repeat 197 246
IPR002885 Pentatricopeptide_repeat 128 176
IPR002885 Pentatricopeptide_repeat 652 701
IPR002885 Pentatricopeptide_repeat 792 841
No external refs found!