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  5. MA_9146756g0010

MA_9146756g0010


Description : Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana (sp|q9fgr0|cpsf1_arath : 241.0)


Gene families : OG0003000 (Archaeplastida) Phylogenetic Tree(s): OG0003000_tree ,
OG_05_0024006 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0023083 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_9146756g0010
Cluster HCCA: Cluster_393

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00037520 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 Archaeplastida
AT5G51660 ATCPSF160, CPSF160 cleavage and polyadenylation specificity factor 160 0.03 Archaeplastida
Cpa|evm.model.tig00001164.19 No alias Cleavage and polyadenylation specificity factor subunit... 0.01 Archaeplastida
Gb_25539 No alias Cleavage and polyadenylation specificity factor subunit... 0.02 Archaeplastida
Gb_25540 No alias no hits & (original description: none) 0.03 Archaeplastida
Smo82277 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 Archaeplastida
Solyc03g007100.3.1 No alias component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.02 Archaeplastida
Zm00001e008515_P003 No alias component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005049 nuclear export signal receptor activity IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 158 296
No external refs found!