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  5. MA_92309g0010

MA_92309g0010


Description : component TIR1/AFB of auxin receptor complex. component FBX of SCF E3 ubiquitin ligase complex


Gene families : OG0000271 (Archaeplastida) Phylogenetic Tree(s): OG0000271_tree ,
OG_05_0000806 (LandPlants) Phylogenetic Tree(s): OG_05_0000806_tree ,
OG_06_0000796 (SeedPlants) Phylogenetic Tree(s): OG_06_0000796_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_92309g0010
Cluster HCCA: Cluster_245

Target Alias Description ECC score Gene Family Method Actions
AT2G39940 COI1 RNI-like superfamily protein 0.03 Archaeplastida
AT3G26810 AFB2 auxin signaling F-box 2 0.03 Archaeplastida
AT5G49980 AFB5 auxin F-box protein 5 0.02 Archaeplastida
Gb_04516 No alias component TIR1/AFB of auxin receptor complex. component... 0.03 Archaeplastida
Gb_07237 No alias Coronatine-insensitive protein homolog 1b OS=Oryza... 0.02 Archaeplastida
Gb_14175 No alias component TIR1/AFB of auxin receptor complex. component... 0.01 Archaeplastida
Gb_30742 No alias Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis... 0.01 Archaeplastida
MA_10427099g0010 No alias Coronatine-insensitive protein homolog 1b OS=Oryza... 0.04 Archaeplastida
MA_263909g0010 No alias Coronatine-insensitive protein homolog 1b OS=Oryza... 0.03 Archaeplastida
MA_646265g0010 No alias Coronatine-insensitive protein homolog 1a OS=Oryza... 0.04 Archaeplastida
Mp6g02750.1 No alias component TIR1/AFB of auxin receptor complex. component... 0.02 Archaeplastida
Pp3c18_16630V3.1 No alias GRR1-like protein 1 0.02 Archaeplastida
Pp3c23_18960V3.1 No alias RNI-like superfamily protein 0.02 Archaeplastida
Pp3c9_10120V3.1 No alias RNI-like superfamily protein 0.03 Archaeplastida
Smo163526 No alias Coronatine-insensitive protein 1 OS=Arabidopsis thaliana 0.02 Archaeplastida
Zm00001e008324_P001 No alias component TIR1/AFB of auxin receptor complex. component... 0.04 Archaeplastida
Zm00001e040776_P001 No alias component TIR1/AFB of auxin receptor complex. component... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Neighborhood
MF GO:0004620 phospholipase activity IEP Neighborhood
MF GO:0004629 phospholipase C activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!