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  5. MA_933431g0010

MA_933431g0010


Description : Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana (sp|q9ln22|ppr54_arath : 551.0)


Gene families : OG0000152 (Archaeplastida) Phylogenetic Tree(s): OG0000152_tree ,
OG_05_0000102 (LandPlants) Phylogenetic Tree(s): OG_05_0000102_tree ,
OG_06_0009795 (SeedPlants) Phylogenetic Tree(s): OG_06_0009795_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_933431g0010

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00261890 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g62470,... 0.02 Archaeplastida
AMTR_s00011p00263440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
AMTR_s00019p00029790 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80880,... 0.03 Archaeplastida
AMTR_s00022p00121040 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
AMTR_s00022p00129420 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
AMTR_s00078p00045650 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g52640,... 0.02 Archaeplastida
AMTR_s00105p00044870 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71060,... 0.02 Archaeplastida
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.05 Archaeplastida
GSVIVT01027384001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 Archaeplastida
GSVIVT01029740001 No alias Pentatricopeptide repeat-containing protein At3g62470,... 0.02 Archaeplastida
Gb_08432 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.05 Archaeplastida
Gb_11871 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.05 Archaeplastida
Gb_12501 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.03 Archaeplastida
Gb_13617 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
Gb_19758 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Gb_41835 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.06 Archaeplastida
LOC_Os01g60010.1 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.05 Archaeplastida
LOC_Os02g48122.1 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.01 Archaeplastida
LOC_Os03g51840.1 No alias Pentatricopeptide repeat-containing protein At3g49730... 0.02 Archaeplastida
LOC_Os08g28180.1 No alias Pentatricopeptide repeat-containing protein At2g13420,... 0.11 Archaeplastida
LOC_Os09g37070.1 No alias Pentatricopeptide repeat-containing protein At1g20300,... 0.02 Archaeplastida
MA_6218g0010 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida
Solyc09g082390.3.1 No alias Pentatricopeptide repeat-containing protein At3g22670,... 0.05 Archaeplastida
Zm00001e005553_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e015617_P001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 104 148
IPR002885 Pentatricopeptide_repeat 204 253
IPR002885 Pentatricopeptide_repeat 379 428
IPR002885 Pentatricopeptide_repeat 274 323
IPR002885 Pentatricopeptide_repeat 174 200
No external refs found!