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  5. MA_9353022g0010

MA_9353022g0010


Description : Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana (sp|q9lsl9|pp445_arath : 555.0)


Gene families : OG0003504 (Archaeplastida) Phylogenetic Tree(s): OG0003504_tree ,
OG_05_0002667 (LandPlants) Phylogenetic Tree(s): OG_05_0002667_tree ,
OG_06_0001694 (SeedPlants) Phylogenetic Tree(s): OG_06_0001694_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_9353022g0010
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00197790 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
LOC_Os02g37140.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
MA_565112g0010 No alias no hits & (original description: none) 0.09 Archaeplastida
Smo62267 No alias Pentatricopeptide repeat-containing protein At1g62910... 0.03 Archaeplastida
Solyc10g081880.3.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.02 Archaeplastida
Zm00001e016326_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.06 Archaeplastida
Zm00001e020910_P002 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
Zm00001e022836_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 235 266
IPR002885 Pentatricopeptide_repeat 645 676
IPR002885 Pentatricopeptide_repeat 274 323
IPR002885 Pentatricopeptide_repeat 487 533
IPR002885 Pentatricopeptide_repeat 754 800
IPR002885 Pentatricopeptide_repeat 99 148
IPR002885 Pentatricopeptide_repeat 417 463
IPR002885 Pentatricopeptide_repeat 344 393
IPR002885 Pentatricopeptide_repeat 169 218
IPR002885 Pentatricopeptide_repeat 687 727
IPR002885 Pentatricopeptide_repeat 543 598
IPR002885 Pentatricopeptide_repeat 68 97
No external refs found!