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  5. AMTR_s00001p00115760

AMTR_s00001p00115760 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.82

Description : Cell wall.cell wall proteins.expansins.alpha-type expansin


Gene families : OG0000024 (Archaeplastida) Phylogenetic Tree(s): OG0000024_tree ,
OG_05_0000028 (LandPlants) Phylogenetic Tree(s): OG_05_0000028_tree ,
OG_06_0006420 (SeedPlants) Phylogenetic Tree(s): OG_06_0006420_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00115760
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00134750 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
AMTR_s00168p00074090 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT2G28950 EXPA6, ATEXP6,... expansin A6 0.03 Archaeplastida
AT4G01630 ATHEXP ALPHA... expansin A17 0.02 Archaeplastida
AT4G38210 ATEXPA20,... expansin A20 0.04 Archaeplastida
AT5G39270 EXPA22, ATEXP22,... expansin A22 0.05 Archaeplastida
AT5G39300 ATEXPA25,... expansin A25 0.02 Archaeplastida
Cre10.g462816 No alias No description available 0.02 Archaeplastida
GSVIVT01016525001 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
GSVIVT01030191001 No alias Expansin-A8 OS=Arabidopsis thaliana 0.06 Archaeplastida
Gb_01048 No alias alpha-class expansin 0.06 Archaeplastida
Gb_01500 No alias alpha-class expansin 0.03 Archaeplastida
Gb_01502 No alias alpha-class expansin 0.04 Archaeplastida
Gb_01505 No alias alpha-class expansin 0.02 Archaeplastida
Gb_01506 No alias Expansin-A8 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_06127 No alias alpha-class expansin 0.03 Archaeplastida
Gb_07439 No alias alpha-class expansin 0.03 Archaeplastida
Gb_20678 No alias alpha-class expansin 0.05 Archaeplastida
LOC_Os02g16730.1 No alias alpha-class expansin 0.02 Archaeplastida
MA_184474g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_36587g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_4979g0010 No alias alpha-class expansin 0.03 Archaeplastida
MA_6644365g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_70880g0010 No alias alpha-class expansin 0.02 Archaeplastida
MA_915221g0010 No alias alpha-class expansin 0.02 Archaeplastida
Mp1g22700.1 No alias alpha-class expansin 0.01 Archaeplastida
Mp2g18610.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp3g09760.1 No alias alpha-class expansin 0.02 Archaeplastida
Mp8g18860.1 No alias alpha-class expansin 0.02 Archaeplastida
Pp3c14_18450V3.1 No alias expansin A14 0.01 Archaeplastida
Pp3c18_19660V3.1 No alias expansin A9 0.03 Archaeplastida
Pp3c18_19720V3.1 No alias expansin A1 0.01 Archaeplastida
Pp3c20_5780V3.1 No alias expansin A15 0.02 Archaeplastida
Pp3c21_1850V3.1 No alias expansin A1 0.02 Archaeplastida
Pp3c8_870V3.1 No alias expansin A1 0.01 Archaeplastida
Smo230202 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.02 Archaeplastida
Smo410512 No alias Cell wall.cell wall proteins.expansins.alpha-type expansin 0.03 Archaeplastida
Smo95369 No alias Expansin-A10 OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc02g081210.3.1 No alias alpha-class expansin 0.08 Archaeplastida
Solyc03g115310.1.1 No alias alpha-class expansin 0.03 Archaeplastida
Solyc06g051800.3.1 No alias alpha-class expansin 0.02 Archaeplastida
Solyc10g084780.3.1 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e000429_P001 No alias alpha-class expansin 0.01 Archaeplastida
Zm00001e004714_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e004719_P001 No alias alpha-class expansin 0.02 Archaeplastida
Zm00001e004720_P001 No alias alpha-class expansin 0.03 Archaeplastida
Zm00001e004721_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e014247_P001 No alias Expansin-A23 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e017221_P001 No alias alpha-class expansin 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004497 monooxygenase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
BP GO:0006184 obsolete GTP catabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
BP GO:0043086 negative regulation of catalytic activity IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044092 negative regulation of molecular function IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050661 NADP binding IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0051258 protein polymerization IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 169 246
IPR009009 RlpA-like_DPBB 71 157
No external refs found!