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  5. MA_9392719g0010

MA_9392719g0010


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana (sp|q9sy02|pp301_arath : 524.0)


Gene families : OG0009320 (Archaeplastida) Phylogenetic Tree(s): OG0009320_tree ,
OG_05_0094228 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0075281 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_9392719g0010
Cluster HCCA: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
Gb_02544 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida
Gb_33727 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.05 Archaeplastida
MA_733561g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 349 374
IPR002885 Pentatricopeptide_repeat 186 211
IPR002885 Pentatricopeptide_repeat 245 271
IPR002885 Pentatricopeptide_repeat 643 667
IPR002885 Pentatricopeptide_repeat 214 240
IPR002885 Pentatricopeptide_repeat 439 464
IPR002885 Pentatricopeptide_repeat 543 568
IPR002885 Pentatricopeptide_repeat 377 405
IPR032867 DYW_dom 741 809
IPR002885 Pentatricopeptide_repeat 406 434
IPR002885 Pentatricopeptide_repeat 111 159
IPR002885 Pentatricopeptide_repeat 467 515
IPR002885 Pentatricopeptide_repeat 570 617
IPR002885 Pentatricopeptide_repeat 273 321
No external refs found!