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  5. AMTR_s00001p00138570

AMTR_s00001p00138570


Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0017163 (LandPlants) Phylogenetic Tree(s): OG_05_0017163_tree ,
OG_06_0019494 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00138570

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00257350 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00016p00252350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g22690... 0.01 Archaeplastida
AMTR_s00019p00238380 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g35130,... 0.02 Archaeplastida
AMTR_s00177p00030580 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.02 Archaeplastida
AMTR_s00276p00017800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.03 Archaeplastida
AMTR_s00439p00011030 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.02 Archaeplastida
AT3G20730 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G47840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
LOC_Os03g63560.1 No alias OTP70 plastidial RNA splicing factor 0.01 Archaeplastida
LOC_Os04g49520.1 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.03 Archaeplastida
LOC_Os07g31000.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os10g39460.2 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo109283 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Smo77340 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
Smo97139 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.01 Archaeplastida
Solyc12g096680.1.1 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 344 391
IPR002885 Pentatricopeptide_repeat 193 223
IPR002885 Pentatricopeptide_repeat 286 315
IPR002885 Pentatricopeptide_repeat 445 474
IPR002885 Pentatricopeptide_repeat 518 541
IPR002885 Pentatricopeptide_repeat 480 507
IPR002885 Pentatricopeptide_repeat 224 254
IPR002885 Pentatricopeptide_repeat 100 130
IPR002885 Pentatricopeptide_repeat 162 188
IPR002885 Pentatricopeptide_repeat 131 160
IPR002885 Pentatricopeptide_repeat 255 280
No external refs found!