1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00001p00141780

AMTR_s00001p00141780 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.119

Description : Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0011968 (LandPlants) Phylogenetic Tree(s): OG_05_0011968_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00141780
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AT5G04780 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
LOC_Os02g58330.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Smo30095 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Smo82072 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Archaeplastida
Solyc12g096680.1.1 No alias Pentatricopeptide repeat-containing protein At2g03880,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
MF GO:0070001 aspartic-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 75 130
IPR002885 Pentatricopeptide_repeat 158 181
No external refs found!