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  5. MA_946216g0010

MA_946216g0010


Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana (sp|q9sit7|pp151_arath : 465.0)


Gene families : OG0008685 (Archaeplastida) Phylogenetic Tree(s): OG0008685_tree ,
OG_05_0026501 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0024888 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_946216g0010
Cluster HCCA: Cluster_308

Target Alias Description ECC score Gene Family Method Actions
Gb_28171 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.07 Archaeplastida
Gb_28759 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
MA_5858185g0010 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 362 406
IPR002885 Pentatricopeptide_repeat 260 304
IPR002885 Pentatricopeptide_repeat 159 206
IPR002885 Pentatricopeptide_repeat 71 119
IPR002885 Pentatricopeptide_repeat 130 158
IPR002885 Pentatricopeptide_repeat 435 458
IPR002885 Pentatricopeptide_repeat 334 359
No external refs found!