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  5. AMTR_s00001p00165480

AMTR_s00001p00165480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.155

Description : Pentatricopeptide repeat-containing protein At3g07290, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0003504 (Archaeplastida) Phylogenetic Tree(s): OG0003504_tree ,
OG_05_0002667 (LandPlants) Phylogenetic Tree(s): OG_05_0002667_tree ,
OG_06_0019496 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00165480
Cluster HCCA: Cluster_231

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01030055001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.05 Archaeplastida
GSVIVT01038280001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.02 Archaeplastida
LOC_Os02g37140.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.02 Archaeplastida
MA_103970g0010 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
Solyc10g081880.3.1 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.03 Archaeplastida
Zm00001e022836_P001 No alias Pentatricopeptide repeat-containing protein At5g65560... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004019 adenylosuccinate synthase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
CC GO:0005664 nuclear origin of replication recognition complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006163 purine nucleotide metabolic process IEP Neighborhood
BP GO:0006164 purine nucleotide biosynthetic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006753 nucleoside phosphate metabolic process IEP Neighborhood
MF GO:0008409 5'-3' exonuclease activity IEP Neighborhood
BP GO:0009117 nucleotide metabolic process IEP Neighborhood
BP GO:0009165 nucleotide biosynthetic process IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0072521 purine-containing compound metabolic process IEP Neighborhood
BP GO:0072522 purine-containing compound biosynthetic process IEP Neighborhood
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 204 226
IPR002885 Pentatricopeptide_repeat 832 860
IPR002885 Pentatricopeptide_repeat 239 268
IPR002885 Pentatricopeptide_repeat 336 368
IPR002885 Pentatricopeptide_repeat 655 702
IPR002885 Pentatricopeptide_repeat 516 564
IPR002885 Pentatricopeptide_repeat 585 634
IPR002885 Pentatricopeptide_repeat 375 424
IPR002885 Pentatricopeptide_repeat 278 318
IPR002885 Pentatricopeptide_repeat 764 807
IPR002885 Pentatricopeptide_repeat 445 494
No external refs found!