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  5. AMTR_s00001p00171160

AMTR_s00001p00171160 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.159

Description : Solute transport.channels.MSL mechanosensitive ion channel


Gene families : OG0000539 (Archaeplastida) Phylogenetic Tree(s): OG0000539_tree ,
OG_05_0000961 (LandPlants) Phylogenetic Tree(s): OG_05_0000961_tree ,
OG_06_0002744 (SeedPlants) Phylogenetic Tree(s): OG_06_0002744_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00171160
Cluster HCCA: Cluster_157

Target Alias Description ECC score Gene Family Method Actions
AT2G17000 No alias Mechanosensitive ion channel family protein 0.02 Archaeplastida
GSVIVT01023959001 No alias Solute transport.channels.MSL mechanosensitive ion channel 0.04 Archaeplastida
GSVIVT01023963001 No alias Solute transport.channels.MSL mechanosensitive ion channel 0.03 Archaeplastida
LOC_Os04g47320.1 No alias mechanosensitive ion channel (MSL) 0.02 Archaeplastida
Solyc08g061980.4.1 No alias mechanosensitive ion channel (MSL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
CC GO:0005666 RNA polymerase III complex IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005811 lipid droplet IEP Neighborhood
BP GO:0006383 transcription by RNA polymerase III IEP Neighborhood
CC GO:0012511 monolayer-surrounded lipid storage body IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR006685 MscS_channel 670 875
No external refs found!