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  5. MA_957303g0010

MA_957303g0010


Description : Pentatricopeptide repeat-containing protein At1g52620 OS=Arabidopsis thaliana (sp|q9ssr4|ppr77_arath : 525.0)


Gene families : OG0010975 (Archaeplastida) Phylogenetic Tree(s): OG0010975_tree ,
OG_05_0010924 (LandPlants) Phylogenetic Tree(s): OG_05_0010924_tree ,
OG_06_0010866 (SeedPlants) Phylogenetic Tree(s): OG_06_0010866_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_957303g0010
Cluster HCCA: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00216810 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
LOC_Os11g04295.1 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.03 Archaeplastida
Solyc03g116560.1.1 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.02 Archaeplastida
Zm00001e024077_P001 No alias Pentatricopeptide repeat-containing protein At1g52620... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000077 DNA damage checkpoint IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 432 476
IPR002885 Pentatricopeptide_repeat 755 801
IPR002885 Pentatricopeptide_repeat 358 407
IPR002885 Pentatricopeptide_repeat 568 617
IPR002885 Pentatricopeptide_repeat 498 547
IPR002885 Pentatricopeptide_repeat 233 279
IPR002885 Pentatricopeptide_repeat 638 687
IPR002885 Pentatricopeptide_repeat 123 150
IPR002885 Pentatricopeptide_repeat 319 352
No external refs found!