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  5. AMTR_s00001p00223800

AMTR_s00001p00223800 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.233

Description : RNA biosynthesis.transcriptional activation.SRS transcription factor


Gene families : OG0001199 (Archaeplastida) Phylogenetic Tree(s): OG0001199_tree ,
OG_05_0000755 (LandPlants) Phylogenetic Tree(s): OG_05_0000755_tree ,
OG_06_0000578 (SeedPlants) Phylogenetic Tree(s): OG_06_0000578_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00223800
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AT2G21400 SRS3 SHI-related sequence3 0.03 Archaeplastida
GSVIVT01009812001 No alias RNA biosynthesis.transcriptional activation.SRS... 0.04 Archaeplastida
LOC_Os01g72490.1 No alias transcription factor (SRS) 0.06 Archaeplastida
MA_2299g0010 No alias transcription factor (SRS) 0.03 Archaeplastida
Mp3g19510.1 No alias transcription factor (SRS) 0.03 Archaeplastida
Solyc02g062400.3.1 No alias transcription factor (SRS) 0.02 Archaeplastida
Solyc10g054070.1.1 No alias transcription factor (SRS) 0.08 Archaeplastida
Solyc11g064800.3.1 No alias transcription factor (SRS) 0.05 Archaeplastida
Zm00001e013256_P002 No alias transcription factor (SRS) 0.02 Archaeplastida
Zm00001e026854_P001 No alias transcription factor (SRS) 0.03 Archaeplastida
Zm00001e034798_P001 No alias transcription factor (SRS) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
CC GO:0030288 outer membrane-bounded periplasmic space IEP Neighborhood
CC GO:0042597 periplasmic space IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
MF GO:0051213 dioxygenase activity IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
InterPro domains Description Start Stop
IPR007818 SHI 91 152
IPR007818 SHI 20 95
No external refs found!