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  5. AMTR_s00001p00228610

AMTR_s00001p00228610 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00001.239

Description : Photosynthesis.photophosphorylation.photosystem II.assembly and maintenance.HCF244 protein


Gene families : OG0006338 (Archaeplastida) Phylogenetic Tree(s): OG0006338_tree ,
OG_05_0007788 (LandPlants) Phylogenetic Tree(s): OG_05_0007788_tree ,
OG_06_0009748 (SeedPlants) Phylogenetic Tree(s): OG_06_0009748_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00001p00228610
Cluster HCCA: Cluster_227

Target Alias Description ECC score Gene Family Method Actions
Mp8g06810.1 No alias HCF244 protein involved in PS-II assembly 0.02 Archaeplastida
Smo235693 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Zm00001e003972_P002 No alias HCF244 protein involved in PS-II assembly 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0016149 translation release factor activity, codon specific IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
InterPro domains Description Start Stop
IPR008030 NmrA-like 67 289
No external refs found!