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  5. MA_99733g0010

MA_99733g0010


Description : RNA helicase (Sub2). helicase component UAP56 of TREX/THO mRNP trafficking complex


Gene families : OG0002910 (Archaeplastida) Phylogenetic Tree(s): OG0002910_tree ,
OG_05_0002914 (LandPlants) Phylogenetic Tree(s): OG_05_0002914_tree ,
OG_06_0002579 (SeedPlants) Phylogenetic Tree(s): OG_06_0002579_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_99733g0010
Cluster HCCA: Cluster_522

Target Alias Description ECC score Gene Family Method Actions
AT5G11170 No alias DEAD/DEAH box RNA helicase family protein 0.03 Archaeplastida
Cpa|evm.model.tig00001376.20 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
GSVIVT01035843001 No alias RNA processing.messenger ribonucleoprotein particle... 0.04 Archaeplastida
Gb_14863 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.04 Archaeplastida
LOC_Os01g36890.2 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.04 Archaeplastida
LOC_Os01g36920.2 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 Archaeplastida
Mp1g02350.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 Archaeplastida
Solyc06g066060.3.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000726 non-recombinational repair IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 188 353
IPR001650 Helicase_C 393 500
No external refs found!