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  5. ChrSy.fgenesh.mRNA.12

ChrSy.fgenesh.mRNA.12


Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 84.7)


Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0009090 (LandPlants) Phylogenetic Tree(s): OG_05_0009090_tree ,
OG_06_0008068 (SeedPlants) Phylogenetic Tree(s): OG_06_0008068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrSy.fgenesh.mRNA.12
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.48 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
ChrSy.fgenesh.mRNA.87 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
ChrUn.fgenesh.mRNA.5 No alias no hits & (original description: none) 0.05 Archaeplastida
ChrUn.fgenesh.mRNA.52 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
ChrUn.fgenesh.mRNA.53 No alias no hits & (original description: none) 0.05 Archaeplastida
ChrUn.fgenesh.mRNA.7 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_00235 No alias Uncharacterized mitochondrial protein AtMg00860... 0.04 Archaeplastida
Gb_02835 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_12881 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_14507 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_23550 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_25344 No alias Uncharacterized mitochondrial protein AtMg00860... 0.03 Archaeplastida
Gb_27104 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_30875 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_34528 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 Archaeplastida
Gb_35936 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_38300 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_40970 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 Archaeplastida
LOC_Os08g05250.1 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
InterPro domains Description Start Stop
IPR000477 RT_dom 512 670
IPR001584 Integrase_cat-core 1351 1459
IPR002156 RNaseH_domain 1048 1166
IPR005162 Retrotrans_gag_dom 4 94
No external refs found!