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  5. ChrSy.fgenesh.mRNA.34

ChrSy.fgenesh.mRNA.34


Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 147.0)


Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0006138 (LandPlants) Phylogenetic Tree(s): OG_05_0006138_tree ,
OG_06_0003644 (SeedPlants) Phylogenetic Tree(s): OG_06_0003644_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrSy.fgenesh.mRNA.34
Cluster HCCA: Cluster_320

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.22 No alias no hits & (original description: none) 0.06 Archaeplastida
ChrSy.fgenesh.mRNA.48 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
ChrSy.fgenesh.mRNA.62 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.1 Archaeplastida
ChrSy.fgenesh.mRNA.87 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida
ChrUn.fgenesh.mRNA.5 No alias no hits & (original description: none) 0.03 Archaeplastida
ChrUn.fgenesh.mRNA.7 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_00235 No alias Uncharacterized mitochondrial protein AtMg00860... 0.03 Archaeplastida
Gb_06149 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_10577 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 Archaeplastida
Gb_11519 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 Archaeplastida
Gb_12881 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_14507 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_21510 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_27104 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_28570 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_30875 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_33342 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 Archaeplastida
Gb_34528 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_34869 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_35176 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_35936 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 Archaeplastida
Gb_38300 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc08g041685.1.1 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR000477 RT_dom 261 419
IPR001584 Integrase_cat-core 765 872
No external refs found!