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  5. ChrSy.fgenesh.mRNA.38

ChrSy.fgenesh.mRNA.38


Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 149.0)


Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0006138 (LandPlants) Phylogenetic Tree(s): OG_05_0006138_tree ,
OG_06_0003644 (SeedPlants) Phylogenetic Tree(s): OG_06_0003644_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrSy.fgenesh.mRNA.38
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.48 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida
ChrUn.fgenesh.mRNA.5 No alias no hits & (original description: none) 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.53 No alias no hits & (original description: none) 0.07 Archaeplastida
ChrUn.fgenesh.mRNA.7 No alias no hits & (original description: none) 0.07 Archaeplastida
Gb_00235 No alias Uncharacterized mitochondrial protein AtMg00860... 0.04 Archaeplastida
Gb_14507 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_23550 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_27104 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_28570 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_34528 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 Archaeplastida
Gb_35176 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_35936 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.01 Archaeplastida
Gb_38300 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc08g041685.1.1 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000477 RT_dom 628 786
IPR005162 Retrotrans_gag_dom 136 231
IPR001878 Znf_CCHC 354 370
No external refs found!