ChrSy.fgenesh.mRNA.52


Description : no hits & (original description: none)


Gene families : OG0001754 (Archaeplastida) Phylogenetic Tree(s): OG0001754_tree ,
OG_05_0001129 (LandPlants) Phylogenetic Tree(s): OG_05_0001129_tree ,
OG_06_0000591 (SeedPlants) Phylogenetic Tree(s): OG_06_0000591_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrSy.fgenesh.mRNA.52
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g31010.1 No alias no hits & (original description: none) 0.07 Archaeplastida
LOC_Os01g31040.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os03g30030.1 No alias no hits & (original description: none) 0.11 Archaeplastida
LOC_Os03g31542.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os03g45734.1 No alias no hits & (original description: none) 0.12 Archaeplastida
LOC_Os03g56040.1 No alias no hits & (original description: none) 0.09 Archaeplastida
LOC_Os04g16459.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os04g34880.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os05g08660.1 No alias no hits & (original description: none) 0.14 Archaeplastida
LOC_Os05g36040.1 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os08g21190.1 No alias no hits & (original description: none) 0.12 Archaeplastida
LOC_Os08g21410.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os08g30050.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os10g24920.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os11g27100.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os11g31860.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os12g21980.1 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001878 Znf_CCHC 820 836
IPR005162 Retrotrans_gag_dom 689 730
IPR005162 Retrotrans_gag_dom 82 171
No external refs found!