ChrSy.fgenesh.mRNA.55

Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 84.7)

Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0009090 (LandPlants) Phylogenetic Tree(s): OG_05_0009090_tree ,
OG_06_0008068 (SeedPlants) Phylogenetic Tree(s): OG_06_0008068_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ChrSy.fgenesh.mRNA.55
Cluster	HCCA: Cluster_205

Target	Alias	Description	ECC score	Gene Family Method
ChrSy.fgenesh.mRNA.48	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.05	Archaeplastida
ChrSy.fgenesh.mRNA.57	No alias	no hits & (original description: none)	0.05	Archaeplastida
ChrSy.fgenesh.mRNA.60	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.05	Archaeplastida
ChrUn.fgenesh.mRNA.52	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.08	Archaeplastida
ChrUn.fgenesh.mRNA.53	No alias	no hits & (original description: none)	0.08	Archaeplastida
ChrUn.fgenesh.mRNA.7	No alias	no hits & (original description: none)	0.08	Archaeplastida
Gb_00235	No alias	Uncharacterized mitochondrial protein AtMg00860...	0.05	Archaeplastida
Gb_06149	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.03	Archaeplastida
Gb_12881	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.03	Archaeplastida
Gb_14507	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_23550	No alias	no hits & (original description: none)	0.05	Archaeplastida
Gb_25344	No alias	Uncharacterized mitochondrial protein AtMg00860...	0.03	Archaeplastida
Gb_27104	No alias	no hits & (original description: none)	0.03	Archaeplastida
Gb_35936	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002156	RNaseH_domain	1120	1230
IPR005162	Retrotrans_gag_dom	71	161
IPR001584	Integrase_cat-core	1415	1523
IPR000477	RT_dom	667	825

External Links

No external refs found!

ChrSy.fgenesh.mRNA.55

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation