ChrSy.fgenesh.mRNA.60


Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 142.0)


Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0006138 (LandPlants) Phylogenetic Tree(s): OG_05_0006138_tree ,
OG_06_0003644 (SeedPlants) Phylogenetic Tree(s): OG_06_0003644_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrSy.fgenesh.mRNA.60
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.17 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
ChrSy.fgenesh.mRNA.55 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
ChrSy.fgenesh.mRNA.62 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.12 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.06 Archaeplastida
ChrUn.fgenesh.mRNA.15 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.27 No alias no hits & (original description: none) 0.07 Archaeplastida
ChrUn.fgenesh.mRNA.51 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.06 Archaeplastida
ChrUn.fgenesh.mRNA.82 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_38876 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 204 220
IPR005162 Retrotrans_gag_dom 27 88
IPR000477 RT_dom 473 631
No external refs found!