ChrSy.fgenesh.mRNA.61


Description : Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana (sp|p92523|m860_arath : 125.0)


Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0006138 (LandPlants) Phylogenetic Tree(s): OG_05_0006138_tree ,
OG_06_0003644 (SeedPlants) Phylogenetic Tree(s): OG_06_0003644_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrSy.fgenesh.mRNA.61
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.48 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida
ChrUn.fgenesh.mRNA.5 No alias no hits & (original description: none) 0.05 Archaeplastida
ChrUn.fgenesh.mRNA.53 No alias no hits & (original description: none) 0.11 Archaeplastida
Gb_00235 No alias Uncharacterized mitochondrial protein AtMg00860... 0.06 Archaeplastida
Gb_02835 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_12881 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 Archaeplastida
Gb_14507 No alias no hits & (original description: none) 0.05 Archaeplastida
Gb_23550 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_25344 No alias Uncharacterized mitochondrial protein AtMg00860... 0.02 Archaeplastida
Gb_27104 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_35936 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 Archaeplastida
Gb_38300 No alias no hits & (original description: none) 0.02 Archaeplastida
Gb_40970 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR000477 RT_dom 584 713
IPR005162 Retrotrans_gag_dom 131 169
IPR001584 Integrase_cat-core 1091 1198
No external refs found!