ChrSy.fgenesh.mRNA.61

Description : Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana (sp|p92523|m860_arath : 125.0)

Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0006138 (LandPlants) Phylogenetic Tree(s): OG_05_0006138_tree ,
OG_06_0003644 (SeedPlants) Phylogenetic Tree(s): OG_06_0003644_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ChrSy.fgenesh.mRNA.61
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
ChrSy.fgenesh.mRNA.48	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.07	Archaeplastida
ChrUn.fgenesh.mRNA.5	No alias	no hits & (original description: none)	0.05	Archaeplastida
ChrUn.fgenesh.mRNA.53	No alias	no hits & (original description: none)	0.11	Archaeplastida
Gb_00235	No alias	Uncharacterized mitochondrial protein AtMg00860...	0.06	Archaeplastida
Gb_02835	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_12881	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.02	Archaeplastida
Gb_14507	No alias	no hits & (original description: none)	0.05	Archaeplastida
Gb_23550	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_25344	No alias	Uncharacterized mitochondrial protein AtMg00860...	0.02	Archaeplastida
Gb_27104	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_35936	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.02	Archaeplastida
Gb_38300	No alias	no hits & (original description: none)	0.02	Archaeplastida
Gb_40970	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	584	713
IPR005162	Retrotrans_gag_dom	131	169
IPR001584	Integrase_cat-core	1091	1198

External Links

No external refs found!