1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. ChrSy.fgenesh.mRNA.62

ChrSy.fgenesh.mRNA.62


Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 82.0)


Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0009090 (LandPlants) Phylogenetic Tree(s): OG_05_0009090_tree ,
OG_06_0008068 (SeedPlants) Phylogenetic Tree(s): OG_06_0008068_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrSy.fgenesh.mRNA.62
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
ATMG00860 ORF158 DNA/RNA polymerases superfamily protein 0.04 Archaeplastida
ChrSy.fgenesh.mRNA.34 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.1 Archaeplastida
ChrSy.fgenesh.mRNA.40 No alias no hits & (original description: none) 0.09 Archaeplastida
ChrSy.fgenesh.mRNA.48 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
ChrSy.fgenesh.mRNA.57 No alias no hits & (original description: none) 0.04 Archaeplastida
ChrSy.fgenesh.mRNA.60 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.11 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida
ChrUn.fgenesh.mRNA.52 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.53 No alias no hits & (original description: none) 0.05 Archaeplastida
ChrUn.fgenesh.mRNA.7 No alias no hits & (original description: none) 0.06 Archaeplastida
ChrUn.fgenesh.mRNA.82 No alias no hits & (original description: none) 0.07 Archaeplastida
Cpa|evm.model.tig00000788.14 No alias Uncharacterized mitochondrial protein AtMg00860... 0.01 Archaeplastida
Gb_00235 No alias Uncharacterized mitochondrial protein AtMg00860... 0.04 Archaeplastida
Gb_06149 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.04 Archaeplastida
Gb_12881 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
Gb_14507 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_18576 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_23550 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_25344 No alias Uncharacterized mitochondrial protein AtMg00860... 0.05 Archaeplastida
Gb_27104 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_30086 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_35936 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
LOC_Os08g05250.1 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0015074 DNA integration IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000477 RT_dom 858 944
IPR005162 Retrotrans_gag_dom 275 365
No external refs found!