ChrSy.fgenesh.mRNA.87

Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 146.0)

Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0006138 (LandPlants) Phylogenetic Tree(s): OG_05_0006138_tree ,
OG_06_0003644 (SeedPlants) Phylogenetic Tree(s): OG_06_0003644_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ChrSy.fgenesh.mRNA.87
Cluster	HCCA: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
ChrSy.fgenesh.mRNA.12	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.05	Archaeplastida
ChrSy.fgenesh.mRNA.34	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.07	Archaeplastida
ChrSy.fgenesh.mRNA.40	No alias	no hits & (original description: none)	0.08	Archaeplastida
ChrSy.fgenesh.mRNA.57	No alias	no hits & (original description: none)	0.05	Archaeplastida
ChrUn.fgenesh.mRNA.11	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.06	Archaeplastida
ChrUn.fgenesh.mRNA.5	No alias	no hits & (original description: none)	0.06	Archaeplastida
ChrUn.fgenesh.mRNA.52	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.03	Archaeplastida
ChrUn.fgenesh.mRNA.53	No alias	no hits & (original description: none)	0.08	Archaeplastida
ChrUn.fgenesh.mRNA.88	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.05	Archaeplastida
LOC_Os09g02520.1	No alias	no hits & (original description: none)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	352	511
IPR001584	Integrase_cat-core	890	997
IPR001878	Znf_CCHC	56	72

External Links

No external refs found!