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  5. ChrUn.fgenesh.mRNA.11

ChrUn.fgenesh.mRNA.11


Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 80.5)


Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0009090 (LandPlants) Phylogenetic Tree(s): OG_05_0009090_tree ,
OG_06_0008068 (SeedPlants) Phylogenetic Tree(s): OG_06_0008068_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrUn.fgenesh.mRNA.11
Cluster HCCA: Cluster_320

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.17 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.09 Archaeplastida
ChrSy.fgenesh.mRNA.22 No alias no hits & (original description: none) 0.04 Archaeplastida
ChrSy.fgenesh.mRNA.48 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
ChrSy.fgenesh.mRNA.62 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida
ChrSy.fgenesh.mRNA.87 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.06 Archaeplastida
ChrUn.fgenesh.mRNA.12 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida
ChrUn.fgenesh.mRNA.15 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida
ChrUn.fgenesh.mRNA.27 No alias no hits & (original description: none) 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.51 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.08 Archaeplastida
ChrUn.fgenesh.mRNA.53 No alias no hits & (original description: none) 0.03 Archaeplastida
ChrUn.fgenesh.mRNA.7 No alias no hits & (original description: none) 0.05 Archaeplastida
ChrUn.fgenesh.mRNA.82 No alias no hits & (original description: none) 0.06 Archaeplastida
Gb_06149 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_11519 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.01 Archaeplastida
Gb_12881 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_27104 No alias no hits & (original description: none) 0.01 Archaeplastida
Gb_35936 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.01 Archaeplastida
LOC_Os08g05250.1 No alias no hits & (original description: none) 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 1055 1151
IPR002156 RNaseH_domain 769 887
IPR000477 RT_dom 378 535
No external refs found!