ChrUn.fgenesh.mRNA.12

Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 152.0)

Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0006138 (LandPlants) Phylogenetic Tree(s): OG_05_0006138_tree ,
OG_06_0003644 (SeedPlants) Phylogenetic Tree(s): OG_06_0003644_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ChrUn.fgenesh.mRNA.12
Cluster	HCCA: Cluster_205

Target	Alias	Description	ECC score	Gene Family Method
ChrSy.fgenesh.mRNA.48	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.11	Archaeplastida
ChrSy.fgenesh.mRNA.57	No alias	no hits & (original description: none)	0.11	Archaeplastida
ChrSy.fgenesh.mRNA.60	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.06	Archaeplastida
ChrSy.fgenesh.mRNA.72	No alias	no hits & (original description: none)	0.04	Archaeplastida
ChrUn.fgenesh.mRNA.11	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.07	Archaeplastida
ChrUn.fgenesh.mRNA.5	No alias	no hits & (original description: none)	0.07	Archaeplastida
ChrUn.fgenesh.mRNA.52	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.09	Archaeplastida
ChrUn.fgenesh.mRNA.53	No alias	no hits & (original description: none)	0.13	Archaeplastida
ChrUn.fgenesh.mRNA.7	No alias	no hits & (original description: none)	0.12	Archaeplastida
Gb_00235	No alias	Uncharacterized mitochondrial protein AtMg00860...	0.05	Archaeplastida
Gb_14507	No alias	no hits & (original description: none)	0.05	Archaeplastida
Gb_23550	No alias	no hits & (original description: none)	0.03	Archaeplastida
LOC_Os09g22130.1	No alias	no hits & (original description: none)	0.06	Archaeplastida
Solyc08g041685.1.1	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004519	endonuclease activity	IEP	Neighborhood
MF	GO:0004521	endoribonuclease activity	IEP	Neighborhood
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
BP	GO:0006508	proteolysis	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005162	Retrotrans_gag_dom	411	506
IPR001584	Integrase_cat-core	1436	1543
IPR000477	RT_dom	899	1057

External Links

No external refs found!