ChrUn.fgenesh.mRNA.27

Description : no hits & (original description: none)

Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0003002 (LandPlants) Phylogenetic Tree(s): OG_05_0003002_tree ,
OG_06_0002016 (SeedPlants) Phylogenetic Tree(s): OG_06_0002016_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ChrUn.fgenesh.mRNA.27
Cluster	HCCA: Cluster_368

Target	Alias	Description	ECC score	Gene Family Method
ChrSy.fgenesh.mRNA.22	No alias	no hits & (original description: none)	0.05	Archaeplastida
ChrSy.fgenesh.mRNA.40	No alias	no hits & (original description: none)	0.04	Archaeplastida
ChrSy.fgenesh.mRNA.48	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.06	Archaeplastida
ChrSy.fgenesh.mRNA.57	No alias	no hits & (original description: none)	0.06	Archaeplastida
ChrSy.fgenesh.mRNA.60	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.07	Archaeplastida
ChrUn.fgenesh.mRNA.11	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.04	Archaeplastida
ChrUn.fgenesh.mRNA.52	No alias	RNA-directed DNA polymerase homolog OS=Oenothera...	0.06	Archaeplastida
ChrUn.fgenesh.mRNA.53	No alias	no hits & (original description: none)	0.1	Archaeplastida
ChrUn.fgenesh.mRNA.7	No alias	no hits & (original description: none)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	endoribonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEA	Interproscan
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
BP	GO:0009987	cellular process	IEP	Neighborhood
BP	GO:0015074	DNA integration	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
BP	GO:0043170	macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044237	cellular metabolic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002156	RNaseH_domain	969	1055
IPR005162	Retrotrans_gag_dom	157	247
IPR000477	RT_dom	687	845

External Links

No external refs found!