ChrUn.fgenesh.mRNA.51


Description : RNA-directed DNA polymerase homolog OS=Oenothera berteroana (sp|p31843|rrpo_oenbe : 140.0)


Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0006138 (LandPlants) Phylogenetic Tree(s): OG_05_0006138_tree ,
OG_06_0003644 (SeedPlants) Phylogenetic Tree(s): OG_06_0003644_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrUn.fgenesh.mRNA.51
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.48 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.11 Archaeplastida
ChrSy.fgenesh.mRNA.57 No alias no hits & (original description: none) 0.08 Archaeplastida
ChrSy.fgenesh.mRNA.60 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.06 Archaeplastida
ChrSy.fgenesh.mRNA.72 No alias no hits & (original description: none) 0.04 Archaeplastida
ChrUn.fgenesh.mRNA.11 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.08 Archaeplastida
ChrUn.fgenesh.mRNA.5 No alias no hits & (original description: none) 0.06 Archaeplastida
ChrUn.fgenesh.mRNA.52 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.08 Archaeplastida
ChrUn.fgenesh.mRNA.53 No alias no hits & (original description: none) 0.1 Archaeplastida
Cre01.g006402 No alias No description available 0.02 Archaeplastida
Gb_00235 No alias Uncharacterized mitochondrial protein AtMg00860... 0.02 Archaeplastida
Gb_10114 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_12173 No alias Uncharacterized mitochondrial protein AtMg00860... 0.02 Archaeplastida
Gb_18721 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_20044 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_22113 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
Gb_23550 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_30475 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.02 Archaeplastida
Gb_37445 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
LOC_Os09g22130.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Solyc08g041685.1.1 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
BP GO:0015074 DNA integration IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 400 497
IPR001584 Integrase_cat-core 1414 1521
IPR001878 Znf_CCHC 608 624
IPR000477 RT_dom 877 1035
No external refs found!