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  5. ChrUn.fgenesh.mRNA.53

ChrUn.fgenesh.mRNA.53


Description : no hits & (original description: none)


Gene families : OG0000001 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0006138 (LandPlants) Phylogenetic Tree(s): OG_05_0006138_tree ,
OG_06_0003644 (SeedPlants) Phylogenetic Tree(s): OG_06_0003644_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ChrUn.fgenesh.mRNA.53
Cluster HCCA: Cluster_156

Target Alias Description ECC score Gene Family Method Actions
ChrSy.fgenesh.mRNA.12 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
ChrSy.fgenesh.mRNA.17 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.09 Archaeplastida
ChrSy.fgenesh.mRNA.22 No alias no hits & (original description: none) 0.05 Archaeplastida
ChrSy.fgenesh.mRNA.38 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.07 Archaeplastida
ChrSy.fgenesh.mRNA.48 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.08 Archaeplastida
ChrSy.fgenesh.mRNA.55 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.08 Archaeplastida
ChrSy.fgenesh.mRNA.61 No alias Uncharacterized mitochondrial protein AtMg00860... 0.11 Archaeplastida
ChrSy.fgenesh.mRNA.62 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.05 Archaeplastida
ChrSy.fgenesh.mRNA.87 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.08 Archaeplastida
ChrUn.fgenesh.mRNA.11 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.03 Archaeplastida
ChrUn.fgenesh.mRNA.12 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.13 Archaeplastida
ChrUn.fgenesh.mRNA.15 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.1 Archaeplastida
ChrUn.fgenesh.mRNA.27 No alias no hits & (original description: none) 0.1 Archaeplastida
ChrUn.fgenesh.mRNA.51 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.1 Archaeplastida
ChrUn.fgenesh.mRNA.7 No alias no hits & (original description: none) 0.08 Archaeplastida
ChrUn.fgenesh.mRNA.82 No alias no hits & (original description: none) 0.06 Archaeplastida
ChrUn.fgenesh.mRNA.88 No alias RNA-directed DNA polymerase homolog OS=Oenothera... 0.06 Archaeplastida
LOC_Os08g05250.1 No alias no hits & (original description: none) 0.07 Archaeplastida
LOC_Os09g02520.1 No alias no hits & (original description: none) 0.05 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 8 62
IPR023780 Chromo_domain 254 298
No external refs found!