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  5. LOC_Os01g04930.1

LOC_Os01g04930.1


Description : transcription factor (MYB-related)


Gene families : OG0000067 (Archaeplastida) Phylogenetic Tree(s): OG0000067_tree ,
OG_05_0000498 (LandPlants) Phylogenetic Tree(s): OG_05_0000498_tree ,
OG_06_0000376 (SeedPlants) Phylogenetic Tree(s): OG_06_0000376_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g04930.1
Cluster HCCA: Cluster_291

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00247840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
AMTR_s00029p00022290 evm_27.TU.AmTr_v1... Transcription factor SRM1 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00029p00215750 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AMTR_s00074p00097250 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AT1G74840 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
AT2G38090 No alias Duplicated homeodomain-like superfamily protein 0.05 Archaeplastida
AT4G36570 ATRL3, RL3 RAD-like 3 0.03 Archaeplastida
AT5G04760 No alias Duplicated homeodomain-like superfamily protein 0.04 Archaeplastida
AT5G05790 No alias Duplicated homeodomain-like superfamily protein 0.04 Archaeplastida
AT5G47390 No alias myb-like transcription factor family protein 0.06 Archaeplastida
GSVIVT01013684001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01015223001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01016370001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
Gb_38499 No alias transcription factor (MYB-related) 0.03 Archaeplastida
LOC_Os01g41900.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
LOC_Os05g37730.1 No alias transcription factor (MYB-related) 0.06 Archaeplastida
LOC_Os08g04840.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
MA_40234g0010 No alias transcription factor (MYB-related) 0.04 Archaeplastida
MA_41041g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
MA_41803g0010 No alias transcription factor (MYB-related) 0.04 Archaeplastida
MA_6326342g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
MA_79012g0010 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Pp3c15_23090V3.1 No alias myb-like transcription factor family protein 0.03 Archaeplastida
Pp3c15_23110V3.1 No alias myb-like transcription factor family protein 0.03 Archaeplastida
Smo133546 No alias RNA biosynthesis.transcriptional activation.MYB... 0.02 Archaeplastida
Smo439294 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Solyc02g082390.1.1 No alias transcription factor (MYB-related) 0.02 Archaeplastida
Solyc04g008870.3.1 No alias transcription factor (MYB-related) 0.02 Archaeplastida
Solyc09g014250.3.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Solyc12g089170.3.1 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e016939_P001 No alias transcription factor (MYB-related) 0.03 Archaeplastida
Zm00001e019254_P001 No alias transcription factor (MYB-related) 0.05 Archaeplastida
Zm00001e025784_P001 No alias transcription factor (MYB-related) 0.06 Archaeplastida
Zm00001e031738_P001 No alias transcription factor (MYB-related) 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 28 73
IPR001005 SANT/Myb 141 185
No external refs found!