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  5. LOC_Os01g05630.1

LOC_Os01g05630.1


Description : histone (H2B)


Gene families : OG0000186 (Archaeplastida) Phylogenetic Tree(s): OG0000186_tree ,
OG_05_0000249 (LandPlants) Phylogenetic Tree(s): OG_05_0000249_tree ,
OG_06_0000187 (SeedPlants) Phylogenetic Tree(s): OG_06_0000187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g05630.1
Cluster HCCA: Cluster_184

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00085300 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
AMTR_s00012p00085960 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
AMTR_s00012p00088340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
AT3G46030 HTB11 Histone superfamily protein 0.05 Archaeplastida
Cpa|evm.model.tig00000944.18 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre06.g264800 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g264900 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre06.g265400 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g266750 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g268100 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g268250 No alias Chromatin organisation.histones.H2B-type histone 0.01 Archaeplastida
Cre06.g273850 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g274250 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Cre06.g274750 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre06.g275800 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g276550 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre06.g276900 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre12.g504550 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Cre12.g504700 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre12.g505600 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre12.g506200 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre13.g570050 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre17.g709150 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre17.g710450 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre17.g711750 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre17.g713450 No alias Chromatin organisation.histones.H2B-type histone 0.06 Archaeplastida
Cre17.g714050 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
GSVIVT01016164001 No alias Chromatin organisation.histones.H2B-type histone 0.08 Archaeplastida
GSVIVT01025021001 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
GSVIVT01025025001 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Gb_12082 No alias histone (H2B) 0.03 Archaeplastida
Gb_12096 No alias histone (H2B) 0.02 Archaeplastida
Gb_26315 No alias histone (H2B) 0.05 Archaeplastida
Gb_32754 No alias histone (H2B) 0.03 Archaeplastida
LOC_Os05g49860.1 No alias histone (H2B) 0.06 Archaeplastida
MA_10435143g0010 No alias histone (H2B) 0.05 Archaeplastida
MA_10435143g0020 No alias histone (H2B) 0.05 Archaeplastida
MA_10436516g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_10436516g0020 No alias histone (H2B) 0.02 Archaeplastida
MA_38565g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_6078786g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_77198g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_8065g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_9293473g0010 No alias histone (H2B) 0.03 Archaeplastida
Mp4g13450.1 No alias histone (H2B) 0.02 Archaeplastida
Mp6g04070.1 No alias histone (H2B) 0.05 Archaeplastida
Pp3c12_7610V3.1 No alias Histone superfamily protein 0.08 Archaeplastida
Pp3c13_23540V3.1 No alias Histone superfamily protein 0.01 Archaeplastida
Pp3c17_15780V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Pp3c17_15800V3.1 No alias Histone superfamily protein 0.02 Archaeplastida
Solyc02g038690.1.1 No alias histone (H2B) 0.04 Archaeplastida
Solyc06g074790.2.1 No alias histone (H2B) 0.05 Archaeplastida
Solyc06g075800.1.1 No alias histone (H2B) 0.05 Archaeplastida
Solyc11g007920.1.1 No alias histone (H2B) 0.04 Archaeplastida
Solyc11g007930.1.1 No alias histone (H2B) 0.04 Archaeplastida
Solyc11g066430.2.1 No alias histone (H2B) 0.05 Archaeplastida
Zm00001e004028_P001 No alias histone (H2B) 0.03 Archaeplastida
Zm00001e010906_P002 No alias histone (H2B) 0.05 Archaeplastida
Zm00001e016882_P001 No alias histone (H2B) 0.05 Archaeplastida
Zm00001e020484_P002 No alias histone (H2B) 0.04 Archaeplastida
Zm00001e022201_P001 No alias histone (H2B) 0.03 Archaeplastida
Zm00001e023342_P001 No alias histone (H2B) 0.06 Archaeplastida
Zm00001e027803_P001 No alias histone (H2B) 0.04 Archaeplastida
Zm00001e034226_P001 No alias histone (H2B) 0.05 Archaeplastida
Zm00001e039057_P002 No alias histone (H2B) 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 6 129
No external refs found!