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  5. LOC_Os01g06010.1

LOC_Os01g06010.1


Description : histone (H2B)


Gene families : OG0000186 (Archaeplastida) Phylogenetic Tree(s): OG0000186_tree ,
OG_05_0000249 (LandPlants) Phylogenetic Tree(s): OG_05_0000249_tree ,
OG_06_0000187 (SeedPlants) Phylogenetic Tree(s): OG_06_0000187_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g06010.1
Cluster HCCA: Cluster_310

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00067980 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
AMTR_s00012p00085300 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
AMTR_s00012p00085960 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
AMTR_s00012p00088340 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
AMTR_s00085p00145460 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
AT1G07790 HTB1 Histone superfamily protein 0.06 Archaeplastida
AT3G09480 No alias Histone superfamily protein 0.02 Archaeplastida
AT3G45980 HTB9, H2B Histone superfamily protein 0.06 Archaeplastida
AT3G46030 HTB11 Histone superfamily protein 0.08 Archaeplastida
AT5G22880 HTB2, H2B histone B2 0.07 Archaeplastida
AT5G59910 HTB4 Histone superfamily protein 0.06 Archaeplastida
Cpa|evm.model.tig00000944.18 No alias Chromatin organisation.histones.H2B-type histone 0.1 Archaeplastida
Cre06.g264800 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g264900 No alias Chromatin organisation.histones.H2B-type histone 0.08 Archaeplastida
Cre06.g266750 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre06.g271376 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre06.g273850 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Cre06.g274250 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
Cre06.g275800 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Cre06.g276550 No alias Chromatin organisation.histones.H2B-type histone 0.08 Archaeplastida
Cre06.g276900 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre12.g504550 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre12.g504700 No alias Chromatin organisation.histones.H2B-type histone 0.06 Archaeplastida
Cre12.g505600 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
Cre12.g506200 No alias Chromatin organisation.histones.H2B-type histone 0.06 Archaeplastida
Cre13.g570050 No alias Chromatin organisation.histones.H2B-type histone 0.08 Archaeplastida
Cre17.g709150 No alias Chromatin organisation.histones.H2B-type histone 0.08 Archaeplastida
Cre17.g710450 No alias Chromatin organisation.histones.H2B-type histone 0.08 Archaeplastida
Cre17.g711750 No alias Chromatin organisation.histones.H2B-type histone 0.08 Archaeplastida
Cre17.g713450 No alias Chromatin organisation.histones.H2B-type histone 0.06 Archaeplastida
Cre17.g714050 No alias Chromatin organisation.histones.H2B-type histone 0.08 Archaeplastida
GSVIVT01016164001 No alias Chromatin organisation.histones.H2B-type histone 0.07 Archaeplastida
GSVIVT01025021001 No alias Chromatin organisation.histones.H2B-type histone 0.05 Archaeplastida
GSVIVT01025023001 No alias Chromatin organisation.histones.H2B-type histone 0.03 Archaeplastida
GSVIVT01025025001 No alias Chromatin organisation.histones.H2B-type histone 0.04 Archaeplastida
Gb_02245 No alias histone (H2B) 0.04 Archaeplastida
Gb_12082 No alias histone (H2B) 0.06 Archaeplastida
Gb_12096 No alias histone (H2B) 0.05 Archaeplastida
Gb_25549 No alias histone (H2B) 0.02 Archaeplastida
Gb_26315 No alias histone (H2B) 0.06 Archaeplastida
Gb_32754 No alias histone (H2B) 0.09 Archaeplastida
MA_10428006g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_10435143g0010 No alias histone (H2B) 0.06 Archaeplastida
MA_10435143g0020 No alias histone (H2B) 0.02 Archaeplastida
MA_10436516g0010 No alias histone (H2B) 0.04 Archaeplastida
MA_10436516g0020 No alias histone (H2B) 0.06 Archaeplastida
MA_38565g0010 No alias histone (H2B) 0.04 Archaeplastida
MA_6078786g0010 No alias histone (H2B) 0.07 Archaeplastida
MA_77198g0010 No alias histone (H2B) 0.02 Archaeplastida
MA_8065g0010 No alias histone (H2B) 0.04 Archaeplastida
MA_9293473g0010 No alias histone (H2B) 0.06 Archaeplastida
Mp4g13450.1 No alias histone (H2B) 0.03 Archaeplastida
Mp6g04070.1 No alias histone (H2B) 0.1 Archaeplastida
Mp6g07010.1 No alias histone (H2B) 0.02 Archaeplastida
Pp3c12_7610V3.1 No alias Histone superfamily protein 0.05 Archaeplastida
Pp3c13_23540V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c14_21050V3.1 No alias Histone superfamily protein 0.02 Archaeplastida
Pp3c17_15780V3.1 No alias Histone superfamily protein 0.02 Archaeplastida
Pp3c6_27740V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Smo182308 No alias Chromatin organisation.histones.H2B-type histone 0.02 Archaeplastida
Solyc02g038690.1.1 No alias histone (H2B) 0.07 Archaeplastida
Solyc03g071620.2.1 No alias histone (H2B) 0.08 Archaeplastida
Solyc05g055440.1.1 No alias histone (H2B) 0.1 Archaeplastida
Solyc06g074780.1.1 No alias histone (H2B) 0.04 Archaeplastida
Solyc06g074790.2.1 No alias histone (H2B) 0.08 Archaeplastida
Solyc06g075800.1.1 No alias histone (H2B) 0.11 Archaeplastida
Solyc11g007920.1.1 No alias histone (H2B) 0.11 Archaeplastida
Solyc11g007930.1.1 No alias histone (H2B) 0.08 Archaeplastida
Solyc11g066430.2.1 No alias histone (H2B) 0.08 Archaeplastida
Solyc12g013510.1.1 No alias histone (H2B) 0.02 Archaeplastida
Zm00001e004028_P001 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e009857_P001 No alias histone (H2B) 0.08 Archaeplastida
Zm00001e010906_P002 No alias histone (H2B) 0.06 Archaeplastida
Zm00001e016882_P001 No alias histone (H2B) 0.08 Archaeplastida
Zm00001e019346_P001 No alias histone (H2B) 0.08 Archaeplastida
Zm00001e020484_P002 No alias histone (H2B) 0.09 Archaeplastida
Zm00001e022201_P001 No alias histone (H2B) 0.08 Archaeplastida
Zm00001e023342_P001 No alias histone (H2B) 0.06 Archaeplastida
Zm00001e027803_P001 No alias histone (H2B) 0.08 Archaeplastida
Zm00001e028779_P003 No alias histone (H2B) 0.07 Archaeplastida
Zm00001e034226_P001 No alias histone (H2B) 0.08 Archaeplastida
Zm00001e038466_P001 No alias histone (H2B) 0.09 Archaeplastida
Zm00001e039057_P002 No alias histone (H2B) 0.08 Archaeplastida
Zm00001e041296_P001 No alias histone (H2B) 0.07 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle IEP Neighborhood
CC GO:0000775 chromosome, centromeric region IEP Neighborhood
CC GO:0000776 kinetochore IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0008156 negative regulation of DNA replication IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
CC GO:0030286 dynein complex IEP Neighborhood
CC GO:0031262 Ndc80 complex IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0048478 replication fork protection IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051053 negative regulation of DNA metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 8 131
No external refs found!