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  5. LOC_Os01g07790.1

LOC_Os01g07790.1


Description : Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana (sp|q9lw07|pglr3_arath : 275.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 211.6)


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0013034 (LandPlants) Phylogenetic Tree(s): OG_05_0013034_tree ,
OG_06_0009813 (SeedPlants) Phylogenetic Tree(s): OG_06_0009813_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g07790.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00090p00047840 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 Archaeplastida
AT1G60590 No alias Pectin lyase-like superfamily protein 0.07 Archaeplastida
AT2G41850 ADPG2, PGAZAT polygalacturonase abscission zone A. thaliana 0.03 Archaeplastida
AT3G26610 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
GSVIVT01004007001 No alias Polygalacturonase OS=Prunus persica 0.04 Archaeplastida
GSVIVT01017279001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana 0.11 Archaeplastida
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01033362001 No alias Cell wall.pectin.modification and... 0.02 Archaeplastida
GSVIVT01033364001 No alias Cell wall.pectin.modification and... 0.02 Archaeplastida
Zm00001e013553_P001 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015267 channel activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0022803 passive transmembrane transporter activity IEP Neighborhood
MF GO:0022838 substrate-specific channel activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 123 432
No external refs found!