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Description : component RPP2 of LSU proteome component
Gene families : OG0001112 (Archaeplastida) Phylogenetic Tree(s): OG0001112_tree ,
OG_05_0001212 (LandPlants) Phylogenetic Tree(s): OG_05_0001212_tree ,
OG_06_0001391 (SeedPlants) Phylogenetic Tree(s): OG_06_0001391_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: LOC_Os01g09510.4 | |
| Cluster | HCCA: Cluster_140 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00071p00177850 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | Archaeplastida | |
| AT2G27710 | No alias | 60S acidic ribosomal protein family | 0.24 | Archaeplastida | |
| AT2G27720 | No alias | 60S acidic ribosomal protein family | 0.19 | Archaeplastida | |
| AT3G44590 | No alias | 60S acidic ribosomal protein family | 0.2 | Archaeplastida | |
| Cpa|evm.model.tig00020830.75 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | Archaeplastida | |
| Cre02.g143050 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.27 | Archaeplastida | |
| GSVIVT01031366001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.16 | Archaeplastida | |
| GSVIVT01033814001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.25 | Archaeplastida | |
| MA_10431146g0010 | No alias | component RPP2 of LSU proteome component | 0.05 | Archaeplastida | |
| MA_177584g0010 | No alias | component RPP2 of LSU proteome component | 0.11 | Archaeplastida | |
| MA_8598039g0010 | No alias | component RPP2 of LSU proteome component | 0.1 | Archaeplastida | |
| Mp1g06260.1 | No alias | component RPP2 of LSU proteome component | 0.15 | Archaeplastida | |
| Mp1g08160.1 | No alias | component RPP2 of LSU proteome component | 0.12 | Archaeplastida | |
| Mp1g18620.1 | No alias | component RPP2 of LSU proteome component | 0.05 | Archaeplastida | |
| Pp3c10_2900V3.1 | No alias | 60S acidic ribosomal protein family | 0.2 | Archaeplastida | |
| Pp3c14_7080V3.1 | No alias | 60S acidic ribosomal protein family | 0.14 | Archaeplastida | |
| Pp3c1_27060V3.1 | No alias | 60S acidic ribosomal protein family | 0.27 | Archaeplastida | |
| Pp3c2_15480V3.1 | No alias | 60S acidic ribosomal protein family | 0.22 | Archaeplastida | |
| Pp3c6_20310V3.1 | No alias | 60S acidic ribosomal protein family | 0.18 | Archaeplastida | |
| Smo139397 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.11 | Archaeplastida | |
| Solyc01g009447.1.1 | No alias | component RPP2 of LSU proteome component | 0.08 | Archaeplastida | |
| Solyc11g067100.2.1 | No alias | component RPP2 of LSU proteome component | 0.19 | Archaeplastida | |
| Zm00001e006597_P001 | No alias | component RPP2 of LSU proteome component | 0.1 | Archaeplastida | |
| Zm00001e026591_P001 | No alias | component RPP2 of LSU proteome component | 0.24 | Archaeplastida | |
| Zm00001e026592_P001 | No alias | component RPP2 of LSU proteome component | 0.24 | Archaeplastida | |
| Zm00001e026593_P001 | No alias | component RPP2 of LSU proteome component | 0.24 | Archaeplastida | |
| Zm00001e026594_P001 | No alias | no hits & (original description: none) | 0.18 | Archaeplastida | |
| Zm00001e041900_P001 | No alias | component RPP2 of LSU proteome component | 0.24 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000213 | tRNA-intron endonuclease activity | IEP | Neighborhood |
| CC | GO:0000276 | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) | IEP | Neighborhood |
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Neighborhood |
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0003746 | translation elongation factor activity | IEP | Neighborhood |
| MF | GO:0004549 | tRNA-specific ribonuclease activity | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005840 | ribosome | IEP | Neighborhood |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006448 | regulation of translational elongation | IEP | Neighborhood |
| BP | GO:0006449 | regulation of translational termination | IEP | Neighborhood |
| BP | GO:0006457 | protein folding | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0007021 | tubulin complex assembly | IEP | Neighborhood |
| BP | GO:0007023 | post-chaperonin tubulin folding pathway | IEP | Neighborhood |
| BP | GO:0008150 | biological_process | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Neighborhood |
| BP | GO:0009893 | positive regulation of metabolic process | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0010628 | positive regulation of gene expression | IEP | Neighborhood |
| CC | GO:0015934 | large ribosomal subunit | IEP | Neighborhood |
| BP | GO:0015985 | energy coupled proton transport, down electrochemical gradient | IEP | Neighborhood |
| BP | GO:0015986 | ATP synthesis coupled proton transport | IEP | Neighborhood |
| CC | GO:0016272 | prefoldin complex | IEP | Neighborhood |
| MF | GO:0016892 | endoribonuclease activity, producing 3'-phosphomonoesters | IEP | Neighborhood |
| MF | GO:0016894 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Neighborhood |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0032270 | positive regulation of cellular protein metabolic process | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | Neighborhood |
| BP | GO:0034250 | positive regulation of cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Neighborhood |
| MF | GO:0043022 | ribosome binding | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043243 | positive regulation of protein complex disassembly | IEP | Neighborhood |
| BP | GO:0043244 | regulation of protein complex disassembly | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044238 | primary metabolic process | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044391 | ribosomal subunit | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044455 | mitochondrial membrane part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| MF | GO:0044877 | protein-containing complex binding | IEP | Neighborhood |
| CC | GO:0045263 | proton-transporting ATP synthase complex, coupling factor F(o) | IEP | Neighborhood |
| BP | GO:0045727 | positive regulation of translation | IEP | Neighborhood |
| BP | GO:0045901 | positive regulation of translational elongation | IEP | Neighborhood |
| BP | GO:0045905 | positive regulation of translational termination | IEP | Neighborhood |
| MF | GO:0048487 | beta-tubulin binding | IEP | Neighborhood |
| BP | GO:0048518 | positive regulation of biological process | IEP | Neighborhood |
| BP | GO:0048522 | positive regulation of cellular process | IEP | Neighborhood |
| MF | GO:0051082 | unfolded protein binding | IEP | Neighborhood |
| BP | GO:0051128 | regulation of cellular component organization | IEP | Neighborhood |
| BP | GO:0051130 | positive regulation of cellular component organization | IEP | Neighborhood |
| BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0051247 | positive regulation of protein metabolic process | IEP | Neighborhood |
| BP | GO:0071704 | organic substance metabolic process | IEP | Neighborhood |
| CC | GO:0098798 | mitochondrial protein complex | IEP | Neighborhood |
| CC | GO:0098800 | inner mitochondrial membrane protein complex | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |