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  5. LOC_Os01g10820.1

LOC_Os01g10820.1


Description : component RPL11 of LSU proteome component


Gene families : OG0001738 (Archaeplastida) Phylogenetic Tree(s): OG0001738_tree ,
OG_05_0001636 (LandPlants) Phylogenetic Tree(s): OG_05_0001636_tree ,
OG_06_0001883 (SeedPlants) Phylogenetic Tree(s): OG_06_0001883_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g10820.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00200160 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 Archaeplastida
AMTR_s00025p00203150 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
AT2G42740 RPL16A ribosomal protein large subunit 16A 0.12 Archaeplastida
AT3G58700 No alias Ribosomal L5P family protein 0.19 Archaeplastida
AT4G18730 RPL16B ribosomal protein L16B 0.32 Archaeplastida
AT5G45775 No alias Ribosomal L5P family protein 0.31 Archaeplastida
Cpa|evm.model.tig00020610.38 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 Archaeplastida
Cre01.g027000 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.22 Archaeplastida
GSVIVT01020743001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 Archaeplastida
GSVIVT01021244001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 Archaeplastida
Gb_08546 No alias component RPL11 of LSU proteome component 0.12 Archaeplastida
MA_57785g0010 No alias 60S ribosomal protein L11-1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_74060g0010 No alias component RPL11 of LSU proteome component 0.1 Archaeplastida
MA_86694g0010 No alias component RPL11 of LSU proteome component 0.27 Archaeplastida
Mp2g24740.1 No alias component RPL11 of LSU proteome component 0.31 Archaeplastida
Mp6g18870.1 No alias component RPL11 of LSU proteome component 0.02 Archaeplastida
Pp3c11_8070V3.1 No alias ribosomal protein L16B 0.22 Archaeplastida
Pp3c1_7710V3.1 No alias ribosomal protein L16B 0.23 Archaeplastida
Pp3c27_2260V3.1 No alias Ribosomal L5P family protein 0.22 Archaeplastida
Pp3c2_33280V3.1 No alias ribosomal protein L16B 0.05 Archaeplastida
Pp3c5_3870V3.1 No alias Ribosomal L5P family protein 0.18 Archaeplastida
Pp3c7_20160V3.1 No alias ribosomal protein large subunit 16A 0.26 Archaeplastida
Smo444767 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.18 Archaeplastida
Solyc02g086240.3.1 No alias component RPL11 of LSU proteome component 0.3 Archaeplastida
Solyc07g055230.4.1 No alias component RPL11 of LSU proteome component 0.23 Archaeplastida
Solyc10g007980.3.1 No alias component RPL11 of LSU proteome component 0.24 Archaeplastida
Solyc12g010930.2.1 No alias component RPL11 of LSU proteome component 0.28 Archaeplastida
Zm00001e014363_P001 No alias no hits & (original description: none) 0.24 Archaeplastida
Zm00001e024913_P001 No alias component RPL11 of LSU proteome component 0.29 Archaeplastida
Zm00001e026886_P003 No alias component RPL11 of LSU proteome component 0.27 Archaeplastida
Zm00001e037255_P001 No alias component RPL11 of LSU proteome component 0.21 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
BP GO:0000105 histidine biosynthetic process IEP Neighborhood
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006547 histidine metabolic process IEP Neighborhood
BP GO:0006694 steroid biosynthetic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008202 steroid metabolic process IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016125 sterol metabolic process IEP Neighborhood
BP GO:0016126 sterol biosynthetic process IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0032977 membrane insertase activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043647 inositol phosphate metabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044455 mitochondrial membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Neighborhood
BP GO:0046164 alcohol catabolic process IEP Neighborhood
BP GO:0046174 polyol catabolic process IEP Neighborhood
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Neighborhood
BP GO:0046855 inositol phosphate dephosphorylation IEP Neighborhood
BP GO:0052803 imidazole-containing compound metabolic process IEP Neighborhood
BP GO:0071545 inositol phosphate catabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098798 mitochondrial protein complex IEP Neighborhood
CC GO:0098800 inner mitochondrial membrane protein complex IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901362 organic cyclic compound biosynthetic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901616 organic hydroxy compound catabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR031309 Ribosomal_L5_C 66 164
IPR031310 Ribosomal_L5_N 9 62
No external refs found!