LOC_Os01g15840.1


Description : Pentatricopeptide repeat-containing protein At5g57250, mitochondrial OS=Arabidopsis thaliana (sp|q9lvd3|pp434_arath : 447.0)


Gene families : OG0013971 (Archaeplastida) Phylogenetic Tree(s): OG0013971_tree ,
OG_05_0013884 (LandPlants) Phylogenetic Tree(s): OG_05_0013884_tree ,
OG_06_0012083 (SeedPlants) Phylogenetic Tree(s): OG_06_0012083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g15840.1
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
Smo420401 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 990 1019
IPR002885 Pentatricopeptide_repeat 885 918
IPR002885 Pentatricopeptide_repeat 924 973
IPR002885 Pentatricopeptide_repeat 613 661
IPR002885 Pentatricopeptide_repeat 520 561
IPR002885 Pentatricopeptide_repeat 684 728
IPR002885 Pentatricopeptide_repeat 443 491
IPR002885 Pentatricopeptide_repeat 376 405
IPR002885 Pentatricopeptide_repeat 1035 1056
IPR002885 Pentatricopeptide_repeat 1069 1094
IPR002885 Pentatricopeptide_repeat 304 333
No external refs found!