1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os01g16090.1

LOC_Os01g16090.1


Description : UBP1-associated protein 2A OS=Arabidopsis thaliana (sp|q9les2|uba2a_arath : 276.0)


Gene families : OG0000953 (Archaeplastida) Phylogenetic Tree(s): OG0000953_tree ,
OG_05_0000628 (LandPlants) Phylogenetic Tree(s): OG_05_0000628_tree ,
OG_06_0000928 (SeedPlants) Phylogenetic Tree(s): OG_06_0000928_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g16090.1
Cluster HCCA: Cluster_307

Target Alias Description ECC score Gene Family Method Actions
AT2G41060 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
GSVIVT01037490001 No alias UBP1-associated protein 2A OS=Arabidopsis thaliana 0.05 Archaeplastida
MA_3634858g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005849 mRNA cleavage factor complex IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
CC GO:1902554 serine/threonine protein kinase complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990316 Atg1/ULK1 kinase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 269 336
IPR000504 RRM_dom 158 225
No external refs found!