LOC_Os01g17430.1

Description : subunit beta of cargo adaptor F-subcomplex

Gene families : OG0003156 (Archaeplastida) Phylogenetic Tree(s): OG0003156_tree ,
OG_05_0003042 (LandPlants) Phylogenetic Tree(s): OG_05_0003042_tree ,
OG_06_0003893 (SeedPlants) Phylogenetic Tree(s): OG_06_0003893_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os01g17430.1
Cluster	HCCA: Cluster_72

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00238440	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.04	Archaeplastida
AT4G31480	No alias	Coatomer, beta subunit	0.1	Archaeplastida
AT4G31490	No alias	Coatomer, beta subunit	0.07	Archaeplastida
Cre04.g217921	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.1	Archaeplastida
GSVIVT01035511001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.08	Archaeplastida
Gb_03760	No alias	subunit beta of cargo adaptor F-subcomplex	0.06	Archaeplastida
Gb_23100	No alias	subunit beta of cargo adaptor F-subcomplex	0.08	Archaeplastida
MA_10431517g0010	No alias	subunit beta of cargo adaptor F-subcomplex	0.08	Archaeplastida
MA_10432097g0020	No alias	subunit beta of cargo adaptor F-subcomplex	0.07	Archaeplastida
MA_230138g0010	No alias	subunit beta of cargo adaptor F-subcomplex	0.07	Archaeplastida
Mp5g08450.1	No alias	subunit beta of cargo adaptor F-subcomplex	0.07	Archaeplastida
Pp3c25_10770V3.1	No alias	Coatomer, beta subunit	0.05	Archaeplastida
Pp3c6_720V3.1	No alias	Coatomer, beta subunit	0.06	Archaeplastida
Pp3c7_8430V3.1	No alias	Coatomer, beta subunit	0.05	Archaeplastida
Smo160340	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.03	Archaeplastida
Solyc01g007150.3.1	No alias	subunit beta of cargo adaptor F-subcomplex	0.04	Archaeplastida
Solyc10g081920.2.1	No alias	subunit beta of cargo adaptor F-subcomplex	0.05	Archaeplastida
Zm00001e009041_P001	No alias	subunit beta of cargo adaptor F-subcomplex	0.11	Archaeplastida
Zm00001e017416_P001	No alias	subunit beta of cargo adaptor F-subcomplex	0.11	Archaeplastida
Zm00001e025465_P001	No alias	subunit beta of cargo adaptor F-subcomplex	0.16	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	IEA	Interproscan
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030126	COPI vesicle coat	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044431	Golgi apparatus part	None	Extended
CC	GO:0044433	cytoplasmic vesicle part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005086	ARF guanyl-nucleotide exchange factor activity	IEP	Neighborhood
BP	GO:0006904	vesicle docking involved in exocytosis	IEP	Neighborhood
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Neighborhood
BP	GO:0009966	regulation of signal transduction	IEP	Neighborhood
BP	GO:0010646	regulation of cell communication	IEP	Neighborhood
CC	GO:0016021	integral component of membrane	IEP	Neighborhood
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Neighborhood
CC	GO:0017119	Golgi transport complex	IEP	Neighborhood
BP	GO:0022406	membrane docking	IEP	Neighborhood
BP	GO:0023051	regulation of signaling	IEP	Neighborhood
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Neighborhood
CC	GO:0030131	clathrin adaptor complex	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	Neighborhood
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	Neighborhood
BP	GO:0048278	vesicle docking	IEP	Neighborhood
BP	GO:0048583	regulation of response to stimulus	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	Neighborhood
BP	GO:0051640	organelle localization	IEP	Neighborhood
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Neighborhood
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Neighborhood
BP	GO:0140029	exocytic process	IEP	Neighborhood
BP	GO:0140056	organelle localization by membrane tethering	IEP	Neighborhood
BP	GO:1902531	regulation of intracellular signal transduction	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR029446	COPB1_appendage_platform_dom	815	942
IPR002553	Clathrin/coatomer_adapt-like_N	22	474
IPR011710	Coatomer_bsu_C	671	809

External Links

No external refs found!

LOC_Os01g17430.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation